Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6pv6
Q-score: 0.18
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryanodine receptor 1 (502 kDa, Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7jmf
Q-score: 0.11
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
- Ryanodine receptor 1 (502 kDa, Protein from Oryctolagus cuniculus)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7jmg
Q-score: 0.155
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Ryanodine receptor type 1 (502 kDa, Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7jmh
Q-score: 0.132
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Ryanodine receptor type 1 (502 kDa, Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7jmi
Q-score: 0.153
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Ryanodine receptor type 1 (502 kDa, Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7jmj
Q-score: 0.133
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A
Nat Commun (2020) 11 pp. 4734-4734 [ Pubmed: 32948759 DOI: doi:10.1038/s41467-020-18403-x ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Ryanodine receptor type 1 (502 kDa, Protein from Oryctolagus cuniculus)
- Ryanodine receptor 1 bound to fkbp1b (2 MDa, Complex from Oryctolagus cuniculus)
Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5t15
Q-score: 0.398
des Georges A, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J
Cell (2016) 167 pp. 145-157.e17 [ Pubmed: 27662087 DOI: doi:10.1016/j.cell.2016.08.075 ]
- Ryanodine receptor 1,ryanodine receptor 1,ryanodine receptor 1,ryanodine receptor 1,ryanodine receptor 1,ryanodine receptor 1,ryanodine receptor 1 (501 kDa, Protein from Oryctolagus cuniculus)
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryr1-cs2 complex (Complex)
Structure of rabbit RyR1 (Ca2+-only dataset, class 1)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5t9m
Q-score: 0.347
des Georges A, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J
Cell (2016) 167 pp. 145-157.e17 [ Pubmed: 27662087 DOI: doi:10.1016/j.cell.2016.08.075 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryanodine receptor 1 (501 kDa, Protein from Oryctolagus cuniculus)
- Ryr1-cs2 complex (Complex)
Structure of rabbit RyR1 (Ca2+-only dataset, class 2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5t9n
Q-score: 0.368
des Georges A, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J
Cell (2016) 167 pp. 145-157.e17 [ Pubmed: 27662087 DOI: doi:10.1016/j.cell.2016.08.075 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryanodine receptor 1 (501 kDa, Protein from Oryctolagus cuniculus)
- Ryr1-cs2 complex (Complex)
Structure of rabbit RyR1 (Ca2+-only dataset, class 3)
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 5t9r
Q-score: 0.19
des Georges A, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J
Cell (2016) 167 pp. 145-157.e17 [ Pubmed: 27662087 DOI: doi:10.1016/j.cell.2016.08.075 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ryanodine receptor 1 (501 kDa, Protein from Oryctolagus cuniculus)
- Ryr1-cs2 complex (Complex)