Structure of the Bacterial Ribosome at 2 Angstrom Resolution (composite structure)
Resolution: 1.98 Å
EM Method: Single-particle
Fitted PDBs: 7k00
Q-score: 0.677
Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JH
eLife (2020) 9 [ Pubmed: 32924932 DOI: doi:10.7554/eLife.60482 ]
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- Paromomycin (615 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- A-site trna-val (24 kDa, RNA from Escherichia coli)
- E. coli 70s ribosome (2 MDa, Complex from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- Spermine (202 Da, Ligand)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Spermidine (145 Da, Ligand)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- Mrna (9 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- E-site trna (589 Da, RNA from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- P-site trna-fmet (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- Ccdc47 (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- Translocon (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (56 kDa, Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- Tmco1 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]
- 60s ribosomal protein l22 (Complex from Homo sapiens)
- 60s ribosomal protein l15 (Complex from Homo sapiens)
- 60s ribosomal protein l39 (Complex from Homo sapiens)
- 40s ribosomal protein s12 (Complex from Homo sapiens)
- 60s ribosomal protein l3 (Complex from Homo sapiens)
- 60s ribosomal protein l37a (Complex from Homo sapiens)
- 40s ribosomal protein s6 (Complex from Homo sapiens)
- 40s ribosomal protein s26 (Complex from Homo sapiens)
- 60s ribosomal protein l31 (Complex from Homo sapiens)
- 60s ribosomal protein l18a (Complex from Homo sapiens)
- 40s ribosomal protein s20 (Complex from Homo sapiens)
- 40s ribosomal protein s3 (Complex from Homo sapiens)
- 60s ribosomal protein l30 (Complex from Homo sapiens)
- 40s ribosomal protein s10 (Complex from Homo sapiens)
- 40s ribosomal protein s15 (Complex from Homo sapiens)
- 60s ribosomal protein l38 (Complex from Homo sapiens)
- 40s ribosomal protein s11 (Complex from Homo sapiens)
- Sec61 complex (70 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l27 (Complex from Homo sapiens)
- 60s ribosomal protein l10a (Complex from Homo sapiens)
- 60s ribosomal protein l24 (Complex from Homo sapiens)
- 40s ribosomal protein s13 (Complex from Homo sapiens)
- 40s ribosomal protein s18 (Complex from Homo sapiens)
- 40s ribosomal protein s28 (Complex from Homo sapiens)
- 40s ribosomal protein s27-like (Complex from Homo sapiens)
- 40s subunit (1 MDa, Complex from Homo sapiens)
- 40s ribosomal protein s29 (Complex from Homo sapiens)
- Tmco1 (21 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l6 (Complex from Homo sapiens)
- 60s ribosomal protein l28 (Complex from Homo sapiens)
- 40s ribosomal protein s14 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (Complex from Homo sapiens)
- 60s ribosomal protein l35 (Complex from Homo sapiens)
- 60s subunit (2 MDa, Complex from Homo sapiens)
- 60s ribosomal protein l34 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (Complex from Homo sapiens)
- 40s ribosomal protein s27 (Complex from Homo sapiens)
- 40s ribosomal protein s9 (Complex from Homo sapiens)
- 40s ribosomal protein sa (Complex from Homo sapiens)
- 60s ribosomal protein l23 (Complex from Homo sapiens)
- 60s ribosomal protein l11 (Complex from Homo sapiens)
- Nomo-nicalin-tmem147 complex (228 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l35a (Complex from Homo sapiens)
- 40s ribosomal protein s7 (Complex from Homo sapiens)
- 60s ribosomal protein l19 (Complex from Homo sapiens)
- 60s ribosomal protein l10 (Complex from Homo sapiens)
- 60s ribosomal protein l32 (Complex from Homo sapiens)
- 40s ribosomal protein s16 (Complex from Homo sapiens)
- 40s ribosomal protein s19 (Complex from Homo sapiens)
- 40s ribosomal protein s17 (Complex from Homo sapiens)
- 40s ribosomal protein s2 (Complex from Homo sapiens)
- 60s ribosomal protein l17 (Complex from Homo sapiens)
- 60s ribosomal protein l5 (Complex from Homo sapiens)
- 40s ribosomal protein s21 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (Complex from Homo sapiens)
- 60s ribosomal protein l9 (Complex from Homo sapiens)
- 60s ribosomal protein l8 (Complex from Homo sapiens)
- 60s ribosomal protein l23a (Complex from Homo sapiens)
- Native complex of a translating ribosome and a novel translocon containing the sec61 complex, tmem147, nomo, nicalin, ccdc47, and tmco1. (3 MDa, Complex from Homo sapiens)
- 60s acidic ribosomal protein p1 (Complex from Homo sapiens)
- 60s ribosomal protein l12 (Complex from Homo sapiens)
- 40s ribosomal protein s4, x isoform (Complex from Homo sapiens)
- 40s ribosomal protein s8 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p2 (Complex from Homo sapiens)
- 60s ribosomal protein l7a (Complex from Homo sapiens)
- 60s ribosomal protein l36a (Complex from Homo sapiens)
- Ccdc47 (56 kDa, Complex from Homo sapiens)
- Translocon (376 kDa, Complex from Homo sapiens)
- 60s ribosomal protein l18 (Complex from Homo sapiens)
- 40s ribosomal protein s5 (Complex from Homo sapiens)
- 40s ribosomal protein s15a (Complex from Homo sapiens)
- 40s ribosomal protein s23 (Complex from Homo sapiens)
- 60s ribosomal protein l4 (Complex from Homo sapiens)
- 60s ribosomal protein l14 (Complex from Homo sapiens)
- 60s ribosomal protein l21 (Complex from Homo sapiens)
- 40s ribosomal protein s24 (Complex from Homo sapiens)
- 60s ribosomal protein l27a (Complex from Homo sapiens)
- 40s ribosomal protein s25 (Complex from Homo sapiens)
- 40s ribosomal protein s3a (Complex from Homo sapiens)
- 60s ribosomal protein l7 (Complex from Homo sapiens)
- 60s ribosomal protein l26 (Complex from Homo sapiens)
- 60s ribosomal protein l13 (Complex from Homo sapiens)
- 40s ribosomal protein s30 (Complex from Homo sapiens)