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sample_name:"S4" AND author_name:"Yokoyama T"
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E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Release date: April 3, 2024
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 8hsp

Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T

Nat Struct Mol Biol (2024) 31 pp. 817-825 [ DOI: doi:10.1038/s41594-024-01238-1 Pubmed: 38538915 ]

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E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Release date: April 3, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8htz
Q-score: 0.657

Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T

Nat Struct Mol Biol (2024) 31 pp. 817-825 [ Pubmed: 38538915 DOI: doi:10.1038/s41594-024-01238-1 ]

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E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Release date: April 3, 2024
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8hu1
Q-score: 0.599

Akiyama N, Ishiguro K, Yokoyama T, Miyauchi K, Nagao A, Shirouzu M, Suzuki T

Nat Struct Mol Biol (2024) 31 pp. 817-825 [ Pubmed: 38538915 DOI: doi:10.1038/s41594-024-01238-1 ]

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Wheat 80S ribosome stalled on AUG-Stop boron dependently

Release date: Feb. 21, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ip8
Q-score: 0.579

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

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Wheat 40S ribosome in complex with a tRNAi

Release date: Feb. 21, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ip9
Q-score: 0.53

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

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Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide

Release date: Feb. 21, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipa
Q-score: 0.471

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

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Wheat 80S ribosome pausing on AUG-Stop with cycloheximide

Release date: Feb. 21, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ipb
Q-score: 0.466

Tanaka M, Yokoyama T, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

Nat Chem Biol (2024) 20 pp. 605-614 [ DOI: doi:10.1038/s41589-023-01513-0 Pubmed: 38267667 ]

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Dibekacin-bound E.coli 70S ribosome in the PURE system

Release date: Feb. 14, 2024
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 8ifb

Tomono J, Asano K, Chiashi T, Suzuki M, Igarashi M, Takahashi Y, Tanaka Y, Yokoyama T

J.Biochem. (2024) 175 pp. 587-598 [ Pubmed: 38227611 DOI: doi:10.1093/jb/mvae002 ]

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Arbekacin-bound E.coli 70S ribosome in the PURE system

Release date: Feb. 14, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ifc
Q-score: 0.62

Tomono J, Asano K, Chiashi T, Suzuki M, Igarashi M, Takahashi Y, Tanaka Y, Yokoyama T

J.Biochem. (2024) 175 pp. 587-598 [ DOI: doi:10.1093/jb/mvae002 Pubmed: 38227611 ]

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Dibekacin-added human 80S ribosome

Release date: Feb. 14, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8ifd
Q-score: 0.539

Tomono J, Asano K, Chiashi T, Suzuki M, Igarashi M, Takahashi Y, Tanaka Y, Yokoyama T

J.Biochem. (2024) 175 pp. 587-598 [ Pubmed: 38227611 DOI: doi:10.1093/jb/mvae002 ]

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