CryoEM structure of the TIR domain from AbTir in complex with 3AD
Resolution: 2.74 Å
EM Method: Helical reconstruction
Fitted PDBs: 7uxu
Q-score: 0.636
Manik MK, Shi Y, Li S, Zaydman MA, Damaraju N, Eastman S, Smith TG, Gu W, Masic V, Mosaiab T, Weagley JS, Hancock SJ, Vasquez E, Hartley-Tassell L, Kargios N, Maruta N, Lim BYJ, Burdett H, Landsberg MJ, Schembri MA, Prokes I, Song L, Grant M, DiAntonio A, Nanson JD, Guo M, Milbrandt J, Ve T, Kobe B
Science (2022) 377 pp. eadc8969-eadc8969 [ Pubmed: 36048923 DOI: doi:10.1126/science.adc8969 ]
- Molecular chaperone tir (15 kDa, Protein from Acinetobacter baumannii)
- Filament of the abtir tir domain in complex with 3ad (Complex from Acinetobacter baumannii)
- [[(2~{r},3~{s},4~{r},5~{r})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{r},3~{s},4~{r},5~{r})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate (686 Da, Ligand)
Multidrug Efflux pump AdeJ with TP-6076 bound
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7ry3
Q-score: 0.562
Morgan CE, Zhang Z, Bonomo RA, Yu EW
Mbio (2022) 13 pp. e0373221-e0373221 [ DOI: doi:10.1128/mbio.03732-21 Pubmed: 35100868 ]
- (4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
- Efflux pump membrane transporter (114 kDa, Protein from Acinetobacter baumannii)
- Multidrug efflux pump adej (Complex from Acinetobacter baumannii)
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6yt9
Q-score: 0.629
Nicholson D, Edwards TA, O'Neill AJ, Ranson NA
Structure (2020) 28 pp. 1087-1100.e3 [ DOI: doi:10.1016/j.str.2020.08.004 Pubmed: 32857965 ]
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s16 (9 kDa, Protein from Acinetobacter baumannii)
- Acinetobacter baumannii ribosome-tigecycline complex - 30s subunit body (Complex from Acinetobacter baumannii)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii)
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 6v3a
Q-score: 0.531
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- Acinetobacter baumannii 70s ribosome with e-site trna bound (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Sodium ion (22 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 6v3b
Q-score: 0.515
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter sp. CIP 102082)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- Acinetobacter baumannii 70s ribosome with no trna bound (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter sp. CIP 51.11)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter sp. 263903-1)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter rudis CIP 110305)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter sp. ANC 4470)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter beijerinckii ANC 3835)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter sp. 809848)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter sp. NIPH 899)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Sodium ion (22 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))