Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8s8k
Q-score: 0.318
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (11 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor eif-1 (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit beta (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 3 subunit c (93 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif3 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Initiation factor eif1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- 60s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8rw1
Q-score: 0.404
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factors eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit a (110 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit c (93 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif3 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8s8f
Q-score: 0.352
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor eif-1 (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8s8g
Q-score: 0.353
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8s8h
Q-score: 0.36
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor eif-1 (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 5 (45 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Water (18 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif5 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8k3o
Q-score: 0.307
Afsar M, Shukla A, Ali F, Maurya RK, Bharti S, Kumar N, Sadik M, Chandra S, Rahil H, Kumar S, Ansari I, Jahan F, Habib S, Hussain T, Krishnan MY, Ramachandran R
Nucleic Acids Res (2024) 52 pp. 13996-14012 [ Pubmed: 39588766 DOI: doi:10.1093/nar/gkae1130 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- Cleaved ap-mrna (7 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosome with cleaved ap-mrna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 16s rrna (503 kDa, RNA from Escherichia coli K-12)