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sample_name:"S4" AND xref_links:"pfam" AND author_name:"Yonath A" AND author_name:"M"
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
Release date: May 15, 2024
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8rxh
Q-score: 0.603
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8rxh
Q-score: 0.603
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]
Sample:
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
- Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- (2s)-2-[2-[4-[[(2r,3s,4s)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid (437 Da, Ligand)
- Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Release date: May 15, 2024
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8rxx
Q-score: 0.601
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8rxx
Q-score: 0.601
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]
Sample:
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
- Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
- 80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAIN
Release date: May 8, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ovj
Q-score: 0.63
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ovj
Q-score: 0.63
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]
Sample:
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- 80s ribosome from leishmania major (Complex from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : PARENTAL STRAIN
Release date: Nov. 29, 2023
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8ova
Q-score: 0.63
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8ova
Q-score: 0.63
Rajan KS, Madmoni H, Bashan A, Taoka M, Aryal S, Nobe Y, Doniger T, Galili Kostin B, Blumberg A, Cohen-Chalamish S, Schwartz S, Rivalta A, Zimmerman E, Unger R, Isobe T, Yonath A, Michaeli S
Nat Commun (2023) 14 pp. 7462-7462 [ Pubmed: 37985661 DOI: doi:10.1038/s41467-023-43263-6 ]
Sample:
- 5s rrna (38 kDa, RNA from Trypanosoma brucei brucei)
- E-site trna (6 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l4 (41 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3, mitochondrial, putative (48 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s10, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal subunit protein l31, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s10 (13 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s7 (23 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l44 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l19, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l35a, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s16, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Us14 (6 kDa, Protein from Trypanosoma brucei brucei)
- Lsua rrna (619 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma brucei brucei)
- Ssu rrna (734 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l37 (10 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l24, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13a, putative (25 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18 (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l30 (11 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23a (18 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-4 (43 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s14 (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s33, putative (11 kDa, Protein from Trypanosoma brucei brucei)
- Probable 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l28, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-2 (59 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l37a, putative (10 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27a (16 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l22, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7a (30 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l36, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l32, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l29 (8 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18a (20 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l15 (26 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein l14, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13 (25 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l41 (4 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l11, putative (22 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein l38, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l34, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s21, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l26, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-1 (69 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Trypanosoma brucei brucei)
- 5.8s rrna (67 kDa, RNA from Trypanosoma brucei brucei)
- Cryo-em structure of trypanosoma brucei procyclic form 80s ribosome : parental strain (Complex from Trypanosoma brucei brucei)
- Rna-binding protein (30 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein sa (31 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s3a (29 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-6 (24 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l21e, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l17, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal proteins s11, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Lsub rrna (494 kDa, RNA from Trypanosoma brucei brucei)
CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
Release date: Nov. 29, 2023
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ove
Q-score: 0.605
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ove
Q-score: 0.605
Rajan KS, Madmoni H, Bashan A, Taoka M, Aryal S, Nobe Y, Doniger T, Galili Kostin B, Blumberg A, Cohen-Chalamish S, Schwartz S, Rivalta A, Zimmerman E, Unger R, Isobe T, Yonath A, Michaeli S
Nat Commun (2023) 14 pp. 7462-7462 [ Pubmed: 37985661 DOI: doi:10.1038/s41467-023-43263-6 ]
Sample:
- E-site trna (6 kDa, RNA from Trypanosoma brucei brucei)
- 5s rrna (38 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l4 (41 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3, mitochondrial, putative (48 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s10, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- Potassium ion (39 Da, Ligand)
- Srrna 1 (69 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s21, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ssu rrna (734 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal subunit protein l31, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s10 (13 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s7 (23 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l24 (14 kDa, Protein from Trypanosoma brucei brucei)
- Srrna 2 (59 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l44 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l19, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- His-thr-cys-thr (461 Da, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35a, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s16, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l37 (10 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- Srrna 6 (24 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l13a, putative (25 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18 (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l30 (11 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23a (18 kDa, Protein from Trypanosoma brucei brucei)
- Lus_alpha rrna (619 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s14 (15 kDa, Protein from Trypanosoma brucei brucei)
- 80s ribosome (Complex from Trypanosoma brucei brucei)
- 40s ribosomal protein s33, putative (11 kDa, Protein from Trypanosoma brucei brucei)
- Probable 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l28, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l37a, putative (10 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27a (16 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l22, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7a (30 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l36, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- Srrna 4 (43 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l32, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l29 (8 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18a (20 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l15 (26 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein l14, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13 (25 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l41 (4 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l11, putative (22 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein l38, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l34, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l26, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Trypanosoma brucei brucei)
- 5.8s rrna (67 kDa, RNA from Trypanosoma brucei brucei)
- Rna-binding protein (30 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein sa (31 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s3a (29 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l21e, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l17, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- Putative ribosomal protein s29 (6 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal proteins s11, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- Lsub rrna (494 kDa, RNA from Trypanosoma brucei brucei)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT
Release date: Oct. 11, 2023
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8a98
Q-score: 0.653
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8a98
Q-score: 0.653
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]
Sample:
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome snorna mutant (Complex from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- El13_chain_i (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
Release date: Oct. 7, 2020
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6zj3
Q-score: 0.548
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6zj3
Q-score: 0.548
Matzov D, Taoka M, Nobe Y, Yamauchi Y, Halfon Y, Asis N, Zimermann E, Rozenberg H, Bashan A, Bhushan S, Isobe T, Gray MW, Yonath A, Shalev-Benami M
Nucleic Acids Res (2020) 48 pp. 11750-11761 [ DOI: doi:10.1093/nar/gkaa893 Pubmed: 33091122 ]
Sample:
- Lsu rrna chain 4 (225 kDa, RNA from Euglena gracilis)
- 18s rrna (747 kDa, RNA from Euglena gracilis)
- 5s rrna (38 kDa, RNA from Euglena gracilis)
- Ribosomal protein el32 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein el37 (13 kDa, Protein from Euglena gracilis)
- Water (18 Da, Ligand)
- Ribosomal protein es19 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein us2 (29 kDa, Protein from Euglena gracilis)
- P-trna (24 kDa, RNA from Euglena gracilis)
- Lsu rrna chain 10 (20 kDa, RNA from Euglena gracilis)
- Lsu rrna chain 5 (170 kDa, RNA from Euglena gracilis)
- Ribosomal protein es10 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us13 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el18 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein es17 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein es7 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein el43 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein el31 (17 kDa, Protein from Euglena gracilis)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein el22 (18 kDa, Protein from Euglena gracilis)
- Rack1 (34 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul4 (41 kDa, Protein from Euglena gracilis)
- Ribosomal protein el39 (6 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 7 (240 kDa, RNA from Euglena gracilis)
- Ribosomal protein es28 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein el36 (12 kDa, Protein from Euglena gracilis)
- Ribosomal protein us5 (27 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul14 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein es30 (7 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 11 (30 kDa, RNA from Euglena gracilis)
- Ribosomal protein us17 (19 kDa, Protein from Euglena gracilis)
- Ribosomal protein us19 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein es31 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el41 (4 kDa, Protein from Euglena gracilis)
- Ribosomal protein el19 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein eseug1 (32 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 9 (52 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul24 (16 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 1 (42 kDa, RNA from Euglena gracilis)
- 60s ribosomal protein l7a (32 kDa, Protein from Euglena gracilis)
- Ribosomal protein es24 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein us12 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein es1 (28 kDa, Protein from Euglena gracilis)
- Euglena gracilis 80s ribosome (Complex from Euglena gracilis)
- Ribosomal protein us9 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul29 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein us11 (16 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr2 (8 kDa, Protein from Euglena gracilis)
- Ribosomal protein us7 (21 kDa, Protein from Euglena gracilis)
- 60s ribosomal protein l10 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein es27 (9 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul18 (29 kDa, Protein from Euglena gracilis)
- Ribosomal protein el20 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein us14 (6 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 8 (199 kDa, RNA from Euglena gracilis)
- Ribosomal protein elegr3 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein es12 (15 kDa, Protein from Euglena gracilis)
- Ribosomal protein us4 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein es21 (10 kDa, Protein from Euglena gracilis)
- Ribosomal protein el40 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el27 (15 kDa, Protein from Euglena gracilis)
- 5.8s rrna (52 kDa, RNA from Euglena gracilis)
- A-site trna (3 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul13 (24 kDa, Protein from Euglena gracilis)
- A-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein ul5 (21 kDa, Protein from Euglena gracilis)
- Ribosomal protein es6 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein el29 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul3 (46 kDa, Protein from Euglena gracilis)
- Ribosomal protein es8 (35 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul22 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein es26 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul2 (28 kDa, Protein from Euglena gracilis)
- Ribosomal protein el33 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul30 (28 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 6 (75 kDa, RNA from Euglena gracilis)
- Ribosomal protein el21 (18 kDa, Protein from Euglena gracilis)
- Ribosomal protein el34 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein el30 (12 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 2 (113 kDa, RNA from Euglena gracilis)
- Ribosomal protein us8 (14 kDa, Protein from Euglena gracilis)
- Ribosomal protein es4 (31 kDa, Protein from Euglena gracilis)
- Ribosomal protein el24 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein us10 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein us3 (24 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul23 (18 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 3 (37 kDa, RNA from Euglena gracilis)
- Ribosomal protein el42 (10 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 13 (27 kDa, RNA from Euglena gracilis)
- Ribosomal protein el14 (25 kDa, Protein from Euglena gracilis)
- Ribosomal protein es25 (13 kDa, Protein from Euglena gracilis)
- Ribosomal protein elegr1 (7 kDa, Protein from Euglena gracilis)
- Ribosomal protein ul6 (22 kDa, Protein from Euglena gracilis)
- Ribosomal protein el38 (9 kDa, Protein from Euglena gracilis)
- Ribosomal protein us15 (17 kDa, Protein from Euglena gracilis)
- Ribosomal protein el6 (22 kDa, Protein from Euglena gracilis)
- Lsu rrna chain 12 (18 kDa, RNA from Euglena gracilis)
- Ribosomal protein el15 (24 kDa, Protein from Euglena gracilis)
- E-trna (24 kDa, RNA from Euglena gracilis)
- Ribosomal protein el13 (25 kDa, Protein from Euglena gracilis)
Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
Release date: Oct. 23, 2019
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6spf
Q-score: 0.461
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6spf
Q-score: 0.461
Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A
PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]
Sample:
- 50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s2 (25 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
- 5s rrna (37 kDa, RNA from Pseudomonas aeruginosa)
- 50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s6 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s21 (4 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s5 (15 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
- Pseudomonas aeruginosa strain pao1 23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
- 50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
- 16s rrna (493 kDa, RNA from Pseudomonas aeruginosa)
- 50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
- Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s18 (6 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
Release date: Oct. 16, 2019
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 6spc
Q-score: 0.444
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 6spc
Q-score: 0.444
Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A
PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]
Sample:
- 30s ribosomal protein s2 (24 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
- 16s rrna (492 kDa, RNA from Pseudomonas aeruginosa)
- 30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s21 (4 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s6 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s8 (13 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s5 (15 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s18 (6 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
Pseudomonas aeruginosa 30s ribosome from a clinical isolate
Release date: Oct. 16, 2019
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6spe
Q-score: 0.46
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6spe
Q-score: 0.46
Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A
PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]
Sample:
- 30s ribosomal protein s2 (26 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s5 (16 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
- 16s ribosomal rna (494 kDa, RNA from Pseudomonas aeruginosa)
- 30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s21 (7 kDa, Protein from Pseudomonas aeruginosa)
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s6 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)