Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9c0q
Q-score: 0.56
Biester A, Grahame DA, Drennan CL
PNAS (2024) 121 pp. e2410995121-e2410995121 [ Pubmed: 39361653 DOI: doi:10.1073/pnas.2410995121 ]
- Acetyl-coa decarbonylase/synthase complex (212 kDa, Complex from Methanosarcina thermophila)
- Fe(3)-ni(1)-s(4) cluster (410 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit alpha 2 (87 kDa, Protein from Methanosarcina thermophila)
- Iron/sulfur cluster (351 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit epsilon 2 (18 kDa, Protein from Methanosarcina thermophila)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9c0r
Q-score: 0.625
Biester A, Grahame DA, Drennan CL
PNAS (2024) 121 pp. e2410995121-e2410995121 [ Pubmed: 39361653 DOI: doi:10.1073/pnas.2410995121 ]
- Acetyl-coa decarbonylase/synthase complex (212 kDa, Complex from Methanosarcina thermophila)
- Fe(3)-ni(1)-s(4) cluster (410 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit alpha 2 (87 kDa, Protein from Methanosarcina thermophila)
- Iron/sulfur cluster (351 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit epsilon 2 (18 kDa, Protein from Methanosarcina thermophila)
- Water (18 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9c0s
Q-score: 0.569
Biester A, Grahame DA, Drennan CL
PNAS (2024) 121 pp. e2410995121-e2410995121 [ Pubmed: 39361653 DOI: doi:10.1073/pnas.2410995121 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Nickel (ii) ion (58 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit beta 2 (52 kDa, Protein from Methanosarcina thermophila)
- Fe(3)-ni(1)-s(4) cluster (410 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex (265 kDa, Complex from Methanosarcina thermophila)
- Acetyl-coa decarbonylase/synthase complex subunit alpha 2 (87 kDa, Protein from Methanosarcina thermophila)
- Carbon monoxide (28 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit epsilon 2 (18 kDa, Protein from Methanosarcina thermophila)
Carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) hexamer from Methanosarcina thermophila
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9c0t
Q-score: 0.586
Biester A, Grahame DA, Drennan CL
PNAS (2024) 121 pp. e2410995121-e2410995121 [ Pubmed: 39361653 DOI: doi:10.1073/pnas.2410995121 ]
- Nickel (ii) ion (58 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit beta 2 (52 kDa, Protein from Methanosarcina thermophila)
- Fe(3)-ni(1)-s(4) cluster (410 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit alpha 2 (87 kDa, Protein from Methanosarcina thermophila)
- Acetyl-coa decarbonylase/synthase complex (318 kDa, Complex from Methanosarcina thermophila)
- Carbon monoxide (28 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Acetyl-coa decarbonylase/synthase complex subunit epsilon 2 (18 kDa, Protein from Methanosarcina thermophila)
Structure of bacterial ribosome determined by cryoEM at 100 keV
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8pva
Q-score: 0.287
McMullan G, Naydenova K, Mihaylov D, Yamashita K, Peet MJ, Wilson H, Dickerson JL, Chen S, Cannone G, Lee Y, Hutchings KA, Gittins O, Sobhy MA, Wells T, El-Gomati MM, Dalby J, Meffert M, Schulze-Briese C, Henderson R, Russo CJ
PNAS (2023) 120 pp. e2312905120-e2312905120 [ Pubmed: 38011573 DOI: doi:10.1073/pnas.2312905120 ]
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- A-site trna-val (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31a (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Mrna (9 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- E-site trna (589 Da, RNA from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- P-site trna-fmet (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- E. coli 70s ribosome (Complex from Escherichia coli)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7aap
Q-score: 0.571
Naydenova K, Muir KW, Wu LF, Zhang Z, Coscia F, Peet MJ, Castro-Hartmann P, Qian P, Sader K, Dent K, Kimanius D, Sutherland JD, Lowe J, Barford D, Russo CJ
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2021946118 Pubmed: 33526596 ]
- Zinc ion (65 Da, Ligand)
- Non-structural protein 12 (110 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rna (5'-r(p*up*up*cp*ap*up*ap*ap*cp*up*up*ap*a)-3') (9 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Pyrophosphate 2- (175 Da, Ligand)
- Rna (5'-r(p*up*up*ap*ap*gp*up*up*ap*u)-3') (7 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- [[(2~{r},3~{s},4~{r},5~{r})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (529 Da, Ligand)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- Nsp7-nsp8-nsp12 sars-cov2 rna-directed rna polymerase in complex with template:primer dsrna and favipiravir-rtp (Complex)
- Nsp7-nsp8-nsp12 sars-cov2 rna-directed rna polymerase (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rna (Complex from Severe acute respiratory syndrome coronavirus 2)