70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7pal
Q-score: 0.324
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Cryo-electron tomograms of untreated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Mrna (2 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Nascent peptide (459 Da, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasmoides pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Resolution: 4.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7pib
Q-score: 0.299
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- Spectinomycin (332 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- Cryo-electron tomograms of spectinomycin-treated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- Elongation factor g (76 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l7/l12 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
PSI-NDH supercomplex of Barley
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Phylloquinone (450 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nadh-plastoquinone oxidoreductase subunit 5 (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-ndh supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca4 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Drosophila melanogaster Testis polysome ribosome
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 6xu7
Q-score: 0.308
Hopes T, Norris K, Agapiou M, McCarthy CGP, Lewis PA, O'Connell MJ, Fontana J, Aspden JL
Nucleic Acids Res (2022) 50 pp. 2240-2257 [ Pubmed: 34283226 DOI: doi:10.1093/nar/gkab606 ]
- 40s ribosomal protein s13 (17 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l41 (3 kDa, Protein from Drosophila melanogaster)
- Fi02809p (14 kDa, Protein from Drosophila melanogaster)
- P-trna (24 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s21 (8 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s26 (12 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s12 (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l24 (6 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l29 (8 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s15aa (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l31 (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l14 (18 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l8 (27 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l39 (6 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l18a (20 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s17 (14 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s3 (25 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l28 (14 kDa, Protein from Drosophila melanogaster)
- Ribosomal protein l22-like protein (11 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l19 (24 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s27 (9 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein sa (24 kDa, Protein from Drosophila melanogaster)
- Geo07455p1 (17 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l7a (27 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s5a (21 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l27a (17 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s2 (24 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s11 (18 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l23 (14 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s7 (22 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s23 (16 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l15 (24 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s16 (16 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s25 (8 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l27 (15 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s14a (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l36 (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l5 (33 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s3a (25 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l37a (10 kDa, Protein from Drosophila melanogaster)
- 18s ribosomal rna (641 kDa, RNA from Drosophila melanogaster)
- Geo07453p1 (15 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l11 (20 kDa, Protein from Drosophila melanogaster)
- Probable 60s ribosomal protein l37-b (9 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s28 (7 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s24 (14 kDa, Protein from Drosophila melanogaster)
- Drosophila melanogaster testis polysome ribosome (Complex from Drosophila melanogaster)
- 60s ribosomal protein l13a (23 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s19a (16 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s8 (23 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l3 (46 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l4 (44 kDa, Protein from Drosophila melanogaster)
- Re25263p (11 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l10 (25 kDa, Protein from Drosophila melanogaster)
- 5s ribosomal rna (38 kDa, RNA from Drosophila melanogaster)
- 60s ribosomal protein l32 (15 kDa, Protein from Drosophila melanogaster)
- Re62581p (18 kDa, Protein from Drosophila melanogaster)
- 28s ribosomal rna (1 MDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s18 (16 kDa, Protein from Drosophila melanogaster)
- Ta01007p (12 kDa, Protein from Drosophila melanogaster)
- 2s ribosomal rna (9 kDa, RNA from Drosophila melanogaster)
- 40s ribosomal protein s10b (10 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l9 (21 kDa, Protein from Drosophila melanogaster)
- Ribosomal protein l6, isoform a (26 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l38 (8 kDa, Protein from Drosophila melanogaster)
- Geo07301p1 (14 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l13 (24 kDa, Protein from Drosophila melanogaster)
- Ubiquitin-40s ribosomal protein s27a (9 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s20 (11 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s29 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s9 (21 kDa, Protein from Drosophila melanogaster)
- Mrna (3 kDa, RNA from Drosophila melanogaster)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Drosophila melanogaster)
- Rh48056p (12 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l18 (21 kDa, Protein from Drosophila melanogaster)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l17 (21 kDa, Protein from Drosophila melanogaster)
- 5.8s ribosomal rna (39 kDa, RNA from Drosophila melanogaster)
- Ip17216p (13 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l7 (26 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s30 (6 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s4 (29 kDa, Protein from Drosophila melanogaster)
- 40s ribosomal protein s6 (26 kDa, Protein from Drosophila melanogaster)
- 60s ribosomal protein l10a-2 (24 kDa, Protein from Drosophila melanogaster)
Structure of small high-light grown Chlorella ohadii photosystem I
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7a4p
Q-score: 0.278
Caspy I, Neumann E, Fadeeva M, Liveanu V, Savitsky A, Frank A, Kalisman YL, Shkolnisky Y, Murik O, Treves H, Hartmann V, Nowaczyk MM, Schuhmann W, Rogner M, Willner I, Kaplan A, Schuster G, Nelson N, Lubitz W, Nechushtai R
Nat Plants (2021) 7 pp. 1314-1322 [ DOI: doi:10.1038/s41477-021-00983-1 Pubmed: 34462576 ]
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (10 kDa, Protein from Chlorella ohadii)
- Psi subunit v (16 kDa, Protein from Chlorella ohadii)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Chlorella ohadii)
- Beta,beta-caroten-4-one (550 Da, Ligand)
- Photosystem i reaction center subunit chloroplastic (15 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlorella ohadii)
- Glutathione reductase (26 kDa, Protein from Chlorella ohadii)
- Small high light grown chlorella ohadii photosystem i (900 kDa, Complex from Chlorella ohadii)
- Psi-k (8 kDa, Protein from Chlorella ohadii)
- Beta-carotene (536 Da, Ligand)
- (3r)-beta,beta-caroten-3-ol (552 Da, Ligand)
- Ergosterol (396 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Chlorella ohadii)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (2s)-3-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate (453 Da, Ligand)
- Psi-f (18 kDa, Protein from Chlorella ohadii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Chlorella ohadii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlorella ohadii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- Palmitic acid (256 Da, Ligand)
- (3~{e},5~{e},7~{e})-6-methyl-8-[(6~{r})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one (260 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Sphingosine (299 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tripalmitoylglycerol (807 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- 2-(2-azanylethanoylamino)ethanoic acid (132 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlorella ohadii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Phosphatidylethanolamine (734 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- [2-((1-oxododecanoxy-(2-hydroxy-3-propanyl))-phosphonate-oxy)-ethyl]-trimethylammonium (440 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlorella ohadii)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Chlorella ohadii)
- (1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Chlorella ohadii)
Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S.
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwh
Q-score: 0.348
Powers KT, Stevenson-Jones F, Yadav SKN, Amthor B, Bufton JC, Borucu U, Shen D, Becker JP, Lavysh D, Hentze MW, Kulozik AE, Neu-Yilik G, Schaffitzel C
Nucleic Acids Res (2021) 49 pp. 7665-7679 [ Pubmed: 34157102 DOI: doi:10.1093/nar/gkab532 ]
- L9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Ul12 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 60s ribosomal protein l24-like protein (15 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (15 kDa, Protein from Oryctolagus cuniculus)
- Ul4 (42 kDa, Protein from Oryctolagus cuniculus)
- Es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- L38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Mrna (4 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (17 kDa, Protein from Oryctolagus cuniculus)
- El29 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s10 (17 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s_sa_c domain-containing protein (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (573 kDa, RNA from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Us11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Epididymis tissue sperm binding protein li 3a (34 kDa, Protein from Oryctolagus cuniculus)
- Blasticidin s (422 Da, Ligand)
- 60s ribosomal protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (7 kDa, Protein from Oryctolagus cuniculus)
- Mammalian pre-termination 80s ribosome with erf1 and erf3 bound by blasticidin s. (3 MDa, Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Erf3a (48 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic peptide chain release factor subunit 1 (49 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- El14 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- L22 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (12 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- S7 (21 kDa, Protein from Oryctolagus cuniculus)
- L7a (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (27 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class03
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6o8y
Q-score: 0.345
Murphy EL, Singh KV, Avila B, Kleffmann T, Gregory ST, Murray BE, Krause KL, Khayat R, Jogl G
Sci Rep (2020) 10 pp. 16301-16301 [ DOI: doi:10.1038/s41598-020-73199-6 Pubmed: 33004869 ]
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (9 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s3 (22 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s18 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l17 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 16s rrna (494 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s13 (12 kDa, Protein from Enterococcus faecalis)
- 23s rrna (941 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- Enterococcus faecalis (2 MDa, Complex from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s19 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l25 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (8 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (6 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s11 (12 kDa, Protein from Enterococcus faecalis)
neurotensin receptor and arrestin2 complex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6up7
Q-score: 0.406
Huang W, Masureel M, Qu Q, Janetzko J, Inoue A, Kato HE, Robertson MJ, Nguyen KC, Glenn JS, Skiniotis G, Kobilka BK
Nature (2020) 579 pp. 303-308 [ Pubmed: 31945771 DOI: doi:10.1038/s41586-020-1953-1 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Arg-arg-pro-tyr-ile-leu (819 Da, Protein from Homo sapiens)
- Neurotensin receptor type 1 (37 kDa, Protein from Homo sapiens)
- Unidentified peptide (783 Da, Protein from Homo sapiens)
- Beta-arrestin-1 (39 kDa, Protein from Homo sapiens)
- Ntsr_arrestin (Complex from Homo sapiens)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sw9
Q-score: 0.337
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Trna (Complex from Escherichia coli)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rna (487 kDa, RNA from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Archaeal translation initiation complex devoid of aif1 - ic2a state (1 MDa, Complex)
- Mrna (Complex from Pyrococcus abyssi GE5)
- Ribosome (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunits alpha, beta and gamma (Complex from Saccharolobus solfataricus P2)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit beta (14 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit alpha (28 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6v3e
Q-score: 0.28
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- Acinetobacter baumannii small ribosomal subunit (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)