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sample_name:"S4" AND xref_links:"scop2" AND xref_links:"chembl" AND author_name:"Y"
Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.
Release date: June 15, 2022
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 7qix
Q-score: 0.648
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 7qix
Q-score: 0.648
Cottilli P, Itoh Y, Nobe Y, Petrov AS, Lison P, Taoka M, Amunts A
Plant Commun. (2022) 3 pp. 100342-100342 [ DOI: doi:10.1016/j.xplc.2022.100342 Pubmed: 35643637 ]
Sample:
- 40s ribosomal protein s3a (29 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s21 (9 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s27 (9 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s8 (24 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us12 (15 kDa, Protein from Solanum lycopersicum)
- 30s ribosomal protein s15, chloroplastic (17 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s7 (22 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s30 (6 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s24 (15 kDa, Protein from Solanum lycopersicum)
- 18s rrna body (583 kDa, RNA from Solanum lycopersicum)
- Potassium ion (39 Da, Ligand)
- 40s body ribosomal protein es4 (29 kDa, Protein from Solanum lycopersicum)
- Ribosomal protein l19 (24 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s15a-1 (14 kDa, Protein from Solanum lycopersicum)
- Ribosomal_s17_n domain-containing protein (17 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s17 (16 kDa, Protein from Solanum lycopersicum)
- Water (18 Da, Ligand)
- Ribosomal protein s14 (16 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein sa (32 kDa, Protein from Solanum lycopersicum)
- 40s body ribosomal protein us4 (23 kDa, Protein from Solanum lycopersicum)
- 60s ribosomal protein l41 (3 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s6 (28 kDa, Protein from Solanum lycopersicum)
- 40s ribosomal protein s26 (14 kDa, Protein from Solanum lycopersicum)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 40s body ribosomal subunit (Complex from Solanum lycopersicum)
- S5 drbm domain-containing protein (30 kDa, Protein from Solanum lycopersicum)
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Release date: May 25, 2022
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 7q08
Q-score: 0.517
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 7q08
Q-score: 0.517
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein el41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the Candida albicans 80S ribosome in complex with blasticidin s
Release date: May 25, 2022
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7q0r
Q-score: 0.448
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7q0r
Q-score: 0.448
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- Blasticidin s (422 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Mixture of the endogenous e-trna (24 kDa, RNA from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the vacant Candida albicans 80S ribosome
Release date: May 18, 2022
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7pzy
Q-score: 0.53
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7pzy
Q-score: 0.53
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Water (18 Da, Ligand)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- Magnesium ion (24 Da, Ligand)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- 1,4-diaminobutane (88 Da, Ligand)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
- Mixture of endogenous e-trnas (24 kDa, RNA from Candida albicans SC5314)
Cryo-EM map of Candida albicans 80S ribosome in complex with phyllanthoside
Release date: May 18, 2022
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 7q0f
Q-score: 0.521
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 7q0f
Q-score: 0.521
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- 3-o-acetyl-2-o-(3-o-acetyl-6-deoxy-beta-d-glucopyranosyl)-6-deoxy-1-o-{[(2r,2's,3a'r,4''s,5''r,6's,7a's)-5''-methyl-4''-{[(2e)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-d-glucopyranose (804 Da, Ligand)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein el41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the Candida albicans 80S ribosome in complex with anisomycin
Release date: May 18, 2022
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7q0p
Q-score: 0.41
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7q0p
Q-score: 0.41
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-b (14 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Anisomycin (265 Da, Ligand)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Mixture of endogenous e-trna (24 kDa, RNA from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna
Release date: March 30, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544
Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y
Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]
Sample:
- Psi-g (9 kDa, Protein from Physcomitrium patens)
- Psao (9 kDa, Protein from Physcomitrium patens)
- Psah (9 kDa, Protein from Physcomitrium patens)
- Phylloquinone (450 Da, Ligand)
- Psi (Complex from Physcomitrium patens)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psak (8 kDa, Protein from Physcomitrium patens)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
- Water (18 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Psad (15 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
- Chlorophyll a isomer (893 Da, Ligand)
- Psi-f (17 kDa, Protein from Physcomitrium patens)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
- Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
- Psae (7 kDa, Protein from Physcomitrium patens)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
Cryo-EM structure of the RC-dLH complex (model_1b) from Gemmatimonas phototrophica at 2.47 A
Release date: March 2, 2022
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 7o0w
Q-score: 0.624
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 7o0w
Q-score: 0.624
Qian P, Gardiner AT, Simova I, Naydenova K, Croll TI, Jackson PJ, Kloz M, Cubakova P, Kuzma M, Zeng Y, Castro-Hartmann P, van Knippenberg B, Goldie KN, Kaftan D, Hrouzek P, Hajek J, Agirre J, Siebert CA, Bina D, Sader K, Stahlberg H, Sobotka R, Russo CJ, Polivka T, Hunter CN, Koblizek M
Sci Adv (2022) 8 pp. eabk3139-eabk3139 [ Pubmed: 35171663 DOI: doi:10.1126/sciadv.abk3139 ]
Sample:
- Bacteriochlorophyll a (911 Da, Ligand)
- Rc-hc (20 kDa, Protein from Gemmatimonas phototrophica)
- Rc-dlh model_1b (800 kDa, Complex from Gemmatimonas phototrophica)
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Heme c (618 Da, Ligand)
- Photosynthetic reaction center l subunit (30 kDa, Protein from Gemmatimonas phototrophica)
- Prch domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Light-harvesting protein b:885 subunit beta (5 kDa, Protein from Gemmatimonas phototrophica)
- (2~{s},3~{s},4~{s},5~{s})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid (262 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Multiheme_cytc domain-containing protein (38 kDa, Protein from Gemmatimonas phototrophica)
- 2-acetamido-2-deoxy-alpha-d-glucopyranose (221 Da, Ligand)
- Rc-m (41 kDa, Protein from Gemmatimonas phototrophica)
- [(2~{s})-3-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate (787 Da, Ligand)
- Rc-s (21 kDa, Protein from Gemmatimonas phototrophica)
- Lhh-alpha (6 kDa, Protein from Gemmatimonas phototrophica)
- [(2~{s})-3-[(2~{r},3~{r},4~{r},5~{s},6~{r})-6-(hydroxymethyl)-5-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate (837 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- (2~{e},4~{e},6~{e},10~{e},12~{e},14~{e},16~{e},18~{e},20~{e},22~{z},24~{e},26~{e},28~{e})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid (610 Da, Ligand)
- Lhc domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- (2r,5r,11r,14r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate (1 kDa, Ligand)
- Lhc domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Rc-u (13 kDa, Protein from Gemmatimonas phototrophica)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (19r,22s)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9z)-hexadec-9-enoate (689 Da, Ligand)
Cryo-EM structure (model_2b) of the RC-dLH complex from Gemmatimonas phototrophica at 2.44 A
Release date: March 2, 2022
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 7o0x
Q-score: 0.629
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 7o0x
Q-score: 0.629
Qian P, Gardiner AT, Simova I, Naydenova K, Croll TI, Jackson PJ, Kloz M, Cubakova P, Kuzma M, Zeng Y, Castro-Hartmann P, van Knippenberg B, Goldie KN, Kaftan D, Hrouzek P, Hajek J, Agirre J, Siebert CA, Bina D, Sader K, Stahlberg H, Sobotka R, Russo CJ, Polivka T, Hunter CN, Koblizek M
Sci Adv (2022) 8 pp. eabk3139-eabk3139 [ Pubmed: 35171663 DOI: doi:10.1126/sciadv.abk3139 ]
Sample:
- Bacteriochlorophyll a (911 Da, Ligand)
- Rc-hc (20 kDa, Protein from Gemmatimonas phototrophica)
- (1r)-2-{[(s)-{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (749 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Rc-dlh model_2b (800 kDa, Complex from Gemmatimonas phototrophica)
- Heme c (618 Da, Ligand)
- Photosynthetic reaction center l subunit (30 kDa, Protein from Gemmatimonas phototrophica)
- Prch domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Light-harvesting protein b:885 subunit beta (5 kDa, Protein from Gemmatimonas phototrophica)
- (2~{s},3~{s},4~{s},5~{s})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid (262 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Multiheme_cytc domain-containing protein (38 kDa, Protein from Gemmatimonas phototrophica)
- 2-acetamido-2-deoxy-alpha-d-glucopyranose (221 Da, Ligand)
- Rc-m (41 kDa, Protein from Gemmatimonas phototrophica)
- [(2~{s})-3-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-octadecanoyloxy-propyl] octadecanoate (787 Da, Ligand)
- Rc-s (21 kDa, Protein from Gemmatimonas phototrophica)
- Lhh-alpha (6 kDa, Protein from Gemmatimonas phototrophica)
- [(2~{s})-3-[(2~{r},3~{r},4~{r},5~{s},6~{r})-6-(hydroxymethyl)-5-[(2~{r},3~{r},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4-bis(oxidanyl)oxan-2-yl]oxy-2-(12-methyltridecanoyloxy)propyl] 12-methyltridecanoate (837 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- (2~{e},4~{e},6~{e},10~{e},12~{e},14~{e},16~{e},18~{e},20~{e},22~{z},24~{e},26~{e},28~{e})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid (610 Da, Ligand)
- Lhc domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- (2r,5r,11r,14r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate (1 kDa, Ligand)
- Lhc domain-containing protein (7 kDa, Protein from Gemmatimonas phototrophica)
- Rc-u (13 kDa, Protein from Gemmatimonas phototrophica)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (19r,22s)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9z)-hexadec-9-enoate (689 Da, Ligand)
Cryo-EM structure of 80S ribosome from mouse testis
Release date: Feb. 2, 2022
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7cpv
Q-score: 0.534
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7cpv
Q-score: 0.534
Li H, Huo Y, He X, Yao L, Zhang H, Cui Y, Xiao H, Xie W, Zhang D, Wang Y, Zhang S, Tu H, Cheng Y, Guo Y, Cao X, Zhu Y, Jiang T, Guo X, Qin Y, Sha J
Nature (2022) 612 pp. 725-731 [ DOI: doi:10.1038/s41586-022-05508-0 Pubmed: 36517592 ]
Sample:
- 40s ribosomal protein s2 (31 kDa, Protein from Mus musculus)
- 60s ribosomal protein l29 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Mus musculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3a (29 kDa, Protein from Mus musculus)
- Ribosomal protein l39-like (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36a (12 kDa, Protein from Mus musculus)
- 60s ribosomal protein l17 (21 kDa, Protein from Mus musculus)
- Met-trna (24 kDa, RNA from Mus musculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Mus musculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Mus musculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l7 (31 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- Mus musculus 28s ribosomal rna (1 MDa, RNA from Mus musculus)
- Mus musculus 5.8s ribosomal rna (50 kDa, RNA from Mus musculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein sa (32 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s16 (16 kDa, Protein from Mus musculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Mus musculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Mus musculus)
- 60s ribosomal protein l4 (47 kDa, Protein from Mus musculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Mus musculus)
- 40s ribosomal protein s7 (22 kDa, Protein from Mus musculus)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Mus musculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Mus musculus)
- 60s ribosomal protein l26 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Mus musculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Mus musculus)
- Mus musculus 80s ribosome from testis (Complex from Mus musculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Mus musculus)
- 40s ribosomal protein s26 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Mus musculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l32 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l10-like (24 kDa, Protein from Mus musculus)
- 40s ribosomal protein s5 (22 kDa, Protein from Mus musculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Mus musculus)
- 40s ribosomal protein s3 (26 kDa, Protein from Mus musculus)
- Mus musculus 18s ribosomal rna (603 kDa, RNA from Mus musculus)
- 40s ribosomal protein s15 (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l3 (46 kDa, Protein from Mus musculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Mus musculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Mus musculus)
- Mus musculus 5s ribosomal rna (38 kDa, RNA from Mus musculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Mus musculus)
- 60s ribosomal protein l18 (21 kDa, Protein from Mus musculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s6 (28 kDa, Protein from Mus musculus)
- 60s ribosomal protein l24 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Mus musculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Mus musculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Mus musculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Mus musculus)
- 40s ribosomal protein s21 (9 kDa, Protein from Mus musculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Mus musculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Mus musculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23a (17 kDa, Protein from Mus musculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Mus musculus)
- 40s ribosomal protein s10 (18 kDa, Protein from Mus musculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Mus musculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Mus musculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Mus musculus)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Mus musculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Mus musculus)