Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfd
Q-score: 0.526
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Cylic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Psi complex in the ndh-psi supercomplex of arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Arabidopsis thaliana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Arabidopsis thaliana)
- Ndht (10 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Ndho (17 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a (893 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Ndh dependent flow 6 (18 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7dz7
Q-score: 0.567
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas reinhardtii)
- Psi subunit v (20 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i subunit o (13 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7e0k
Q-score: 0.566
Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M
Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Lhcii-2 in the state transition complex psi-lhci-lhcii from pph1;pbcp mutant of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6kac
Q-score: 0.569
Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z
Nat Plants (2019) 5 pp. 1320-1330 [ Pubmed: 31768031 DOI: doi:10.1038/s41477-019-0543-4 ]
- Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Predicted protein (19 kDa, Protein from Chlamydomonas reinhardtii)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
- Unindentified stromal protein (usp) (2 kDa, Protein from Chlamydomonas reinhardtii)
- 4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Bicarbonate ion (61 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- Fe (ii) ion (55 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- 10 kda photosystem ii polypeptide psbr (potential) (1 kDa, Protein from Chlamydomonas reinhardtii)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)
- Oxygen-evolving enhancer protein 3, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- The c2s2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Oxygen-evolving enhancer protein 2, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6kad
Q-score: 0.447
Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z
Nat Plants (2019) 5 pp. 1320-1330 [ Pubmed: 31768031 DOI: doi:10.1038/s41477-019-0543-4 ]
- Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
- Bicarbonate ion (61 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- The c2s2m2l2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
- Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
- Ca-mn4-o5 cluster (339 Da, Ligand)
Structure of photosystem I supercomplex with light-harvesting complexes I and II
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5zji
Q-score: 0.494
Pan X, Ma J, Su X, Cao P, Chang W, Liu Z, Zhang X, Li M
Science (2018) 360 pp. 1109-1113 [ Pubmed: 29880686 DOI: doi:10.1126/science.aat1156 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iii (23 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Maize)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
- Photosystem i reaction center subunit iv a (14 kDa, Protein from Maize)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Photosystem i subunit vii (8 kDa, Protein from maize)
- 16kda membrane protein (14 kDa, Protein from Maize)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit xi (22 kDa, Protein from Maize)
- Chlorophyll a-b binding protein 1, chloroplastic (24 kDa, Protein from Maize)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from maize)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii (21 kDa, Protein from Maize)
- Photosystem i reaction center subunit psak (13 kDa, Protein from Maize)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Maize)
- Supercomplex of plant psi-lhci-lhcii from zea mays (Complex from Zea mays)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit n (15 kDa, Protein from Maize)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Maize)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Maize)
- Photosystem i reaction center subunit v (15 kDa, Protein from Maize)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Maize)
Photosystem I of Chlamydomonas reinhardtii
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6ijj
Q-score: 0.537
Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2019) 5 pp. 273-281 [ DOI: doi:10.1038/s41477-019-0380-5 Pubmed: 30850819 ]
- Phylloquinone (450 Da, Ligand)
- Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Chlamydomonas reinhardtii psi with eight light harvesting antennae (Complex from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
- Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
- Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Psad (21 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Psal (27 kDa, Protein from Chlamydomonas reinhardtii)
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 5xnl
Q-score: 0.508
Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M
Science (2017) 357 pp. 815-820 [ DOI: doi:10.1126/science.aan0327 Pubmed: 28839073 ]
- Cytochrome b559 subunit alpha (9 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein l (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein m (3 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein j (4 kDa, Protein from Pisum sativum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein 8, chloroplastic (24 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein x (8 kDa, Protein from Pisum sativum)
- Photosystem ii d2 protein (39 kDa, Protein from Pisum sativum)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Pisum sativum)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Pisum sativum)
- C2s2m2-type psii-lhcii supercomplex from pisum sativum (Complex from Pisum sativum)
- Oxygen-evolving enhancer protein 1, chloroplastic (26 kDa, Protein from Pisum sativum)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b559 subunit beta, psbf (4 kDa, Protein from Pisum sativum)
- Bicarbonate ion (61 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Pisum sativum)
- Fe (ii) ion (55 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Oxygen-evolving enhancer protein 2, chloroplastic (20 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein i, psbi (4 kDa, Protein from Pisum sativum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Photosystem ii reaction center protein t (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein h (7 kDa, Protein from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb6, cp24 (22 kDa, Protein from Pisum sativum)
- Pheophytin a (871 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb5, cp26 (26 kDa, Protein from Pisum sativum)
- Photosystem ii protein d1 (38 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Pisum sativum)
- Oxygen-evolving enhancer protein 3 (16 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein w (5 kDa, Protein from Pisum sativum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein k (6 kDa, Protein from Pisum sativum)
- Chlorophyll a (893 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb4, cp29 (27 kDa, Protein from Pisum sativum)
- Ca-mn4-o5 cluster (339 Da, Ligand)