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sample_name:"S4" AND xref_links:"scop2" AND xref_links:"interpro" AND author_name:"Wu"
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Release date: May 25, 2022
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 7q08
Q-score: 0.517
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 7q08
Q-score: 0.517
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein el41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the Candida albicans 80S ribosome in complex with blasticidin s
Release date: May 25, 2022
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7q0r
Q-score: 0.448
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7q0r
Q-score: 0.448
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- Blasticidin s (422 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Mixture of the endogenous e-trna (24 kDa, RNA from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the vacant Candida albicans 80S ribosome
Release date: May 18, 2022
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7pzy
Q-score: 0.53
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7pzy
Q-score: 0.53
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Water (18 Da, Ligand)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- Magnesium ion (24 Da, Ligand)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- 1,4-diaminobutane (88 Da, Ligand)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
- Mixture of endogenous e-trnas (24 kDa, RNA from Candida albicans SC5314)
Cryo-EM map of Candida albicans 80S ribosome in complex with phyllanthoside
Release date: May 18, 2022
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 7q0f
Q-score: 0.521
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 7q0f
Q-score: 0.521
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- 3-o-acetyl-2-o-(3-o-acetyl-6-deoxy-beta-d-glucopyranosyl)-6-deoxy-1-o-{[(2r,2's,3a'r,4''s,5''r,6's,7a's)-5''-methyl-4''-{[(2e)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-d-glucopyranose (804 Da, Ligand)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein el41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Cryo-EM map of the Candida albicans 80S ribosome in complex with anisomycin
Release date: May 18, 2022
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7q0p
Q-score: 0.41
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7q0p
Q-score: 0.41
Zgadzay Y, Kolosova O, Stetsenko A, Wu C, Bruchlen D, Usachev K, Validov S, Jenner L, Rogachev A, Yusupova G, Sachs MS, Guskov A, Yusupov M
Sci Adv (2022) 8 pp. eabn1062-eabn1062 [ DOI: doi:10.1126/sciadv.abn1062 Pubmed: 35613268 ]
Sample:
- Ribosomal 60s subunit protein l21a (18 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l16a (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l33a (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l8 (28 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s6 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s29a (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s5 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s23b (16 kDa, Protein from Candida albicans SC5314)
- Ubiquitin-ribosomal 40s subunit protein s31 fusion protein (22 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l6 (19 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l23b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l34b (13 kDa, Protein from Candida albicans SC5314)
- Rpl40bp (6 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l29 (7 kDa, Protein from Candida albicans SC5314)
- Zinc ion (65 Da, Ligand)
- Ribosomal 60s subunit protein l22b (14 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s1 (29 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l7a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l15 (24 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s22-b (14 kDa, Protein from Candida albicans SC5314)
- 25s ribosomal rna (1 MDa, RNA from Candida albicans SC5314)
- 40s ribosomal protein s27 (8 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l39 (6 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l3 (44 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l41 (3 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l18a (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s15 (15 kDa, Protein from Candida albicans SC5314)
- 5s ribosomal rna (38 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s13 (16 kDa, Protein from Candida albicans SC5314)
- Spermidine (145 Da, Ligand)
- Ribosomal 60s subunit protein l38 (8 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l28 (16 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l5 (34 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s2 (26 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s26 (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s21 (9 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s3 (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s20 (13 kDa, Protein from Candida albicans SC5314)
- Habp4_pai-rbp1 domain-containing protein (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s12 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l2a (27 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l30 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s10a (13 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s30 (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l4b (39 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l36 (11 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s0 (28 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l42a (12 kDa, Protein from Candida albicans SC5314)
- Anisomycin (265 Da, Ligand)
- Ribosomal 60s subunit protein l24a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l10 (25 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s18b (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l26b (14 kDa, Protein from Candida albicans SC5314)
- 5.8s ribosomal rna (50 kDa, RNA from Candida albicans SC5314)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Candida albicans SC5314)
- 18s ribosomal rna (575 kDa, RNA from Candida albicans SC5314)
- Ribosomal 40s subunit protein s16a (15 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l13 (23 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s4 (29 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s8 (22 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l43a (10 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s7 (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l37 (10 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s11a (17 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s19a (16 kDa, Protein from Candida albicans SC5314)
- Mixture of endogenous e-trna (24 kDa, RNA from Candida albicans SC5314)
- Ribosomal 60s subunit protein l14b (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l32 (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s17b (15 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s25 (11 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s28b (7 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s9b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l11b (19 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l20 (20 kDa, Protein from Candida albicans SC5314)
- Ribosomal protein l19 (21 kDa, Protein from Candida albicans SC5314)
- 40s ribosomal protein s24 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l17b (21 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l9b (21 kDa, Protein from Candida albicans SC5314)
- Candida albicans 80s ribosome (3 MDa, Complex from Candida albicans SC5314)
- Ribosomal 60s subunit protein l31b (12 kDa, Protein from Candida albicans SC5314)
- 60s ribosomal protein l27 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l35a (14 kDa, Protein from Candida albicans SC5314)
- Ribosomal 60s subunit protein l25 (15 kDa, Protein from Candida albicans SC5314)
- Ribosomal 40s subunit protein s14b (14 kDa, Protein from Candida albicans SC5314)
Barley photosystem I-LHCI-Lhca6 supercomplex
Release date: Jan. 12, 2022
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ewk
Q-score: 0.396
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ewk
Q-score: 0.396
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
Sample:
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi-lhci-lhca6 supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit d (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit h (6 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Hordeum vulgare)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit k (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit f (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit e (7 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit l (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca6 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Barley photosystem I-LHCI-Lhca5 supercomplex
Release date: Dec. 22, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ew6
Q-score: 0.466
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ew6
Q-score: 0.466
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
Sample:
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Psi-lhci-lhca5 supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
PSI-NDH supercomplex of Barley
Release date: Dec. 22, 2021
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
Sample:
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Phylloquinone (450 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nadh-plastoquinone oxidoreductase subunit 5 (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-ndh supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca4 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Structure of the translating Neurospora crassa ribosome arrested by cycloheximide
Release date: Dec. 1, 2021
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7r81
Q-score: 0.539
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7r81
Q-score: 0.539
Shen L, Su Z, Yang K, Wu C, Becker T, Bell-Pedersen D, Zhang J, Sachs MS
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2111862118 Pubmed: 34815343 ]
Sample:
- Ribosomal protein srp1 (18 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s6 (27 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (17 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s30 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s0 (31 kDa, Protein from Neurospora crassa)
- Trna (Complex from Neurospora crassa)
- 60s ribosomal subunit (Complex from Neurospora crassa)
- 60s ribosomal protein l7 (28 kDa, Protein from Neurospora crassa)
- Probable 40s ribosomal protein s10-b (18 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l18 (20 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l10 (25 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l27 (el27) (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s26e (13 kDa, Protein from Neurospora crassa)
- Mrna (Complex from Neurospora crassa)
- 40s ribosomal protein s23 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l40 (6 kDa, Protein from Neurospora crassa)
- Hypothetical protein ncu16635 (el41) (3 kDa, Protein from Neurospora crassa)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Neurospora crassa)
- Mrna (5 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l29 (7 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l39 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s27 (8 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s20 (13 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s7 (22 kDa, Protein from Neurospora crassa)
- Nascent peptide (Complex from Neurospora crassa)
- Ribosomal protein l14 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l17 (20 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s19 (16 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s17 (16 kDa, Protein from Neurospora crassa)
- 26s rrna (1 MDa, RNA from Neurospora crassa)
- 60s ribosomal protein l35 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l43 (10 kDa, Protein from Neurospora crassa)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l25 (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l32 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s4 (29 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s24 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s1 (29 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s8 (23 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s18 (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l34 (13 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s29 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s13 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l13 (23 kDa, Protein from Neurospora crassa)
- 40s ribosomal subunit (Complex from Neurospora crassa)
- 60s ribosomal protein l24 (17 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s25 (10 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s28 (7 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s12 (16 kDa, Protein from Neurospora crassa)
- Cytoplasmic ribosomal protein 10 (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2 (27 kDa, Protein from Neurospora crassa)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Neurospora crassa)
- Structure of the translating neurospora crassa ribosome arrested by cycloheximide (Complex)
- 60s ribosomal protein l8 (29 kDa, Protein from Neurospora crassa)
- 5s rrna (38 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l9 (21 kDa, Protein from Neurospora crassa)
- Ribosomal protein l37 (10 kDa, Protein from Neurospora crassa)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Neurospora crassa)
- Ribosomal protein l26 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l38 (9 kDa, Protein from Neurospora crassa)
- Ribosomal protein l19 (22 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l33 (12 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l23 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l28 (16 kDa, Protein from Neurospora crassa)
- 18s rrna (578 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l16 (26 kDa, Protein from Neurospora crassa)
- Nascent peptide (358 Da, Protein from Neurospora crassa)
- 60s ribosomal protein (14 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s9 (21 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s22 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l36 (11 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l44 (11 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l11 (20 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s14 (us11) (16 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s11 (18 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l20 (20 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l15 (24 kDa, Protein from Neurospora crassa)
- Trna (24 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l3 (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l30 (11 kDa, Protein from Neurospora crassa)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein s2 (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l22 (14 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s21 (9 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s16 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l5 (34 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s5 (23 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l6 (22 kDa, Protein from Neurospora crassa)
- 5.8s rrna (50 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l4-a (38 kDa, Protein from Neurospora crassa)
Release date: April 29, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7bvg
Q-score: 0.537
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7bvg
Q-score: 0.537
Zhang L, Zhao Y, Gao Y, Wu L, Gao R, Zhang Q, Wang Y, Wu C, Wu F, Gurcha SS, Veerapen N, Batt SM, Zhao W, Qin L, Yang X, Wang M, Zhu Y, Zhang B, Bi L, Zhang X, Yang H, Guddat LW, Xu W, Wang Q, Li J, Besra GS, Rao Z
Science (2020) 368 pp. 1211-1219 [ DOI: doi:10.1126/science.aba9102 Pubmed: 32327601 ]
Sample:
- Phosphate ion (94 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Integral membrane indolylacetylinositol arabinosyltransferase embb (119 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- [(2z,6e,10e,14z,18e,22z,26z)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl] [(2s,3s,4s,5r)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate (911 Da, Ligand)
- Emba and embb (Complex from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis arabinosyltransferase emba-embb-acpm2 in complex with di-arabinose (Complex)
- Acpm (Complex from Mycolicibacterium smegmatis MC2 155)
- 4'-phosphopantetheine (358 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Integral membrane indolylacetylinositol arabinosyltransferase emba (116 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Meromycolate extension acyl carrier protein (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)