70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells
Resolution: 7.3 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7paj
Q-score: 0.196
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasma pneumoniae (strain ATCC 29342 / M129))
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasma pneumoniae (strain ATCC 29342 / M129))
- Cryo-electron tomograms of untreated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- Elongation factor tu (43 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells
Resolution: 7.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7pao
Q-score: 0.195
Xue L, Lenz S, Zimmermann-Kogadeeva M, Tegunov D, Cramer P, Bork P, Rappsilber J, Mahamid J
Nature (2022) 610 pp. 205-211 [ Pubmed: 36171285 DOI: doi:10.1038/s41586-022-05255-2 ]
- 30s ribosomal protein s15 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- Cryo-electron tomograms of untreated mycoplasma pneumoniae cells (Cell from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l17 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s8 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s6 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s12 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l27 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l6 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- Elongation factor g (76 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s21 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l28 (7 kDa, Protein from Mycoplasma pneumoniae M129)
- 23s ribosomal rna (940 kDa, RNA from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s2 (33 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l24 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l23 (25 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l2 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s17 (9 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s16 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l9 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 5s ribosomal rna (34 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l10 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l11 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l15 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l29 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l31 (10 kDa, Protein from Mycoplasma pneumoniae M129)
- 16s ribosomal rna (491 kDa, RNA from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l22 (17 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l3 (31 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s10 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s5 (24 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l35 (6 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s18 (12 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l7/l12 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycoplasma pneumoniae M129)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycoplasma pneumoniae M129)
- 30s ribosomal protein s9 (15 kDa, Protein from Mycoplasma pneumoniae M129)
- Trna-phe (24 kDa, RNA from Mycoplasma pneumoniae M129)
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 6rxx
Q-score: 0.156
Cheng J, Bassler J, Fischer P, Lau B, Kellner N, Kunze R, Griesel S, Kallas M, Berninghausen O, Strauss D, Beckmann R, Hurt E
Mol Cell (2019) 75 pp. 1256-1269.e7 [ DOI: doi:10.1016/j.molcel.2019.06.032 Pubmed: 31378463 ]
- 40s ribosomal protein s24 (15 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s13-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Utp4 (97 kDa, Protein from Chaetomium thermophilum)
- Bms1 (134 kDa, Protein from Chaetomium thermophilum)
- Utp20 (295 kDa, Protein from Chaetomium thermophilum)
- Utp7 (63 kDa, Protein from Chaetomium thermophilum)
- Rna 3'-terminal phosphate cyclase-like protein (43 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s7 (23 kDa, Protein from Chaetomium thermophilum)
- U3 small nucleolar rna-associated protein 22 (131 kDa, Protein from Chaetomium thermophilum)
- Utp15 (60 kDa, Protein from Chaetomium thermophilum)
- Enp1 (54 kDa, Protein from Chaetomium thermophilum)
- Noc4 (63 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s5-like protein (23 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s23-like protein (15 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s8 (23 kDa, Protein from Chaetomium thermophilum)
- Utp6 (46 kDa, Protein from Chaetomium thermophilum)
- Kre33 (119 kDa, Protein from Chaetomium thermophilum)
- Bfr2 (69 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s16-like protein (15 kDa, Protein from Chaetomium thermophilum)
- Utp3 (73 kDa, Protein from Chaetomium thermophilum)
- Faf1 (34 kDa, Protein from Chaetomium thermophilum)
- Utp13 (100 kDa, Protein from Chaetomium thermophilum)
- Utp24 (22 kDa, Protein from Chaetomium thermophilum)
- Utp10 (198 kDa, Protein from Chaetomium thermophilum)
- Emg1 (27 kDa, Protein from Chaetomium thermophilum)
- Utp12 (107 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s1 (29 kDa, Protein from Chaetomium thermophilum)
- Utp16 (40 kDa, Protein from Chaetomium thermophilum)
- Fcf2 (22 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s22-like protein (14 kDa, Protein from Chaetomium thermophilum)
- Putative ribosomal protein (17 kDa, Protein from Chaetomium thermophilum)
- Ribosomal protein s27-like protein (8 kDa, Protein from Chaetomium thermophilum)
- Utp18 (69 kDa, Protein from Chaetomium thermophilum)
- 90s pre-ribosome, state c (Complex from Chaetomium thermophilum)
- Putative u3 snornp protein (115 kDa, Protein from Chaetomium thermophilum)
- 35s ribosomal rna (599 kDa, RNA from Chaetomium thermophilum)
- Ribosome biogenesis protein enp2 (75 kDa, Protein from Chaetomium thermophilum)
- Utp2 (103 kDa, Protein from Chaetomium thermophilum)
- Putative nucleolar protein (57 kDa, Protein from Chaetomium thermophilum)
- Utp14 (104 kDa, Protein from Chaetomium thermophilum)
- Snu13 (13 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s19-like protein (17 kDa, Protein from Chaetomium thermophilum)
- U3 snorna (74 kDa, RNA from Chaetomium thermophilum)
- 40s ribosomal protein s28-like protein (7 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s9-like protein (22 kDa, Protein from Chaetomium thermophilum)
- Utp8 (102 kDa, Protein from Chaetomium thermophilum)
- Nop58 (64 kDa, Protein from Chaetomium thermophilum)
- Utp17 (105 kDa, Protein from Chaetomium thermophilum)
- Rrp9 (69 kDa, Protein from Chaetomium thermophilum)
- Zinc ion (65 Da, Ligand)
- Periodic tryptophan protein 2-like protein (100 kDa, Protein from Chaetomium thermophilum)
- Imp3 (21 kDa, Protein from Chaetomium thermophilum)
- Putative u3 small nucleolar ribonucleoprotein protein (86 kDa, Protein from Chaetomium thermophilum)
- Krr1 small subunit processome component (37 kDa, Protein from Chaetomium thermophilum)
- U3 small nucleolar rna-associated protein 11 (31 kDa, Protein from Chaetomium thermophilum)
- Sof1 (50 kDa, Protein from Chaetomium thermophilum)
- Putative u3 small nucleolar ribonucleoprotein (34 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s14-like protein (16 kDa, Protein from Chaetomium thermophilum)
- Rrp7 (36 kDa, Protein from Chaetomium thermophilum)
- Pre-rrna-processing protein pno1 (28 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s6 (27 kDa, Protein from Chaetomium thermophilum)
- Nop1 (32 kDa, Protein from Chaetomium thermophilum)
- Utp5 (44 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s4 (29 kDa, Protein from Chaetomium thermophilum)
- 40s ribosomal protein s11-like protein (18 kDa, Protein from Chaetomium thermophilum)
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Resolution: 6.76 Å
EM Method: Single-particle
Fitted PDBs: 6fxc
Q-score: 0.141
Matzov D, Aibara S, Basu A, Zimmerman E, Bashan A, Yap MF, Amunts A, Yonath AE
Nat Commun (2017) 8 pp. 723-723 [ DOI: doi:10.1038/s41467-017-00753-8 Pubmed: 28959035 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 23s and 5s rrna (Complex from Staphylococcus aureus)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- 100s complex of staphylococcus aureus (Complex from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal proteins (Complex from Staphylococcus aureus)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (19 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (25 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal proteins (Complex from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 50s subunit (Complex from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 16s rrna (Complex from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus)
- 30s subunit (Complex from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 16s ribosomal rna (502 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)