Hannula L, Kuivanen S, Lasham J, Kant R, Kareinen L, Bogacheva M, Strandin T, Sironen T, Hepojoki J, Sharma V, Saviranta P, Kipar A, Vapalahti O, Huiskonen JT, Rissanen I
Microbiol Spectr (2024) 12 pp. e0419922-e0419922 [ DOI: doi:10.1128/spectrum.04199-22 Pubmed: 38363137 ]
CryoEM reconstruction of SARS-CoV-2 Spike in complex with nanobody tri-TMH (closed conformation)
Hannula L, Kuivanen S, Lasham J, Kant R, Kareinen L, Bogacheva M, Strandin T, Sironen T, Hepojoki J, Sharma V, Saviranta P, Kipar A, Vapalahti O, Huiskonen JT, Rissanen I
Microbiol Spectr (2024) 12 pp. e0419922-e0419922 [ DOI: doi:10.1128/spectrum.04199-22 Pubmed: 38363137 ]
SARS-CoV-2 WT Spike in complex with R15 Fab and P14 Nanobody
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y0n
Q-score: 0.333
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- R15-f7 (Complex)
- Complex of sars-cov-2 spike in complex with r15-f7 and p14-f18-35 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of r15-f7 (11 kDa, Protein from Homo sapiens)
- P14 (Complex from Homo sapiens)
- Spike glycoprotein (127 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- P14 nanobody (13 kDa, Protein from Vicugna pacos)
- Heavy chain of r15-f7 (12 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike (Complex from Vicugna pacos)
Interface of SARS-CoV-2 WT Spike in complex with R15 Fab and P14 Nanobody
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y0o
Q-score: 0.3
To Be Published
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- P14 nanobody (13 kDa, Protein from Vicugna pacos)
- Complex of sars-cov-2 spike in complex with r15-f7 and p14-f18-35 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of r15 (11 kDa, Protein from Homo sapiens)
- P14 (Complex)
- Heavy chain of r15 (12 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike (Complex from Homo sapiens)
- R15 (Complex from Vicugna pacos)
- Water (18 Da, Ligand)
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10
Pymm P, Redmond SJ, Dolezal O, Mordant F, Lopez E, Cooney JP, Davidson KC, Haycroft ER, Tan CW, Seneviratna R, Grimley SL, Purcell DFJ, Kent SJ, Wheatley AK, Wang LF, Leis A, Glukhova A, Pellegrini M, Chung AW, Subbarao K, Uldrich AP, Tham WH, Godfrey DI, Gherardin NA
iScience (2022) 25 pp. 105259-105259 [ DOI: doi:10.1016/j.isci.2022.105259 Pubmed: 36213007 ]
- Sars-cov-2 spike (Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike in complex with biparatopic nanobody bp10 (1 MDa, Complex)
- Bp10 biparatopic nanobody (Complex from Vicugna pacos)
- Bp10 biparatopic nanobody (Protein from Vicugna pacos)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement
Pymm P, Redmond SJ, Dolezal O, Mordant F, Lopez E, Cooney JP, Davidson KC, Haycroft ER, Tan CW, Seneviratna R, Grimley SL, Purcell DFJ, Kent SJ, Wheatley AK, Wang LF, Leis A, Glukhova A, Pellegrini M, Chung AW, Subbarao K, Uldrich AP, Tham WH, Godfrey DI, Gherardin NA
iScience (2022) 25 pp. 105259-105259 [ DOI: doi:10.1016/j.isci.2022.105259 Pubmed: 36213007 ]
- Bp10 biparatopic nanobody (Complex from Vicugna pacos)
- Sars-cov-2 spike in complex with biparatopic nanobody bp10 (1 MDa, Complex)
- Sars-cov-2 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 rbd (Protein from Severe acute respiratory syndrome coronavirus 2)
- Bp10 biparatopic nanobody (Protein from Vicugna pacos)