CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : LM32Cs1C1 mutant snoRNA overexpression, class 4
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 8qie
Q-score: 0.655
To Be Published
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome : lm32cs1c1 mutant snorna overexpression, class 4 (Complex from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8rxh
Q-score: 0.603
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ Pubmed: 38722744 DOI: doi:10.1016/j.celrep.2024.114203 ]
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
- Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- (2s)-2-[2-[4-[[(2r,3s,4s)-3-acetyloxy-4-oxidanyl-pyrrolidin-2-yl]methyl]phenoxy]ethanoylamino]-6-azanyl-hexanoic acid (437 Da, Ligand)
- E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8rxx
Q-score: 0.601
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ DOI: doi:10.1016/j.celrep.2024.114203 Pubmed: 38722744 ]
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Mrna_chain_s5 (4 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein s17 family protein (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- 80s ribosome with a/p/e-site trna and mrna (Complex from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- P-site_trna_chain_s3 (24 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- A-site_trna_chain_s2 (24 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAIN
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ovj
Q-score: 0.63
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ DOI: doi:10.1016/j.celrep.2024.114203 Pubmed: 38722744 ]
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- 80s ribosome from leishmania major (Complex from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l10 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13 (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : WILD TYPE
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8a3w
Q-score: 0.607
To Be Published
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome wild type (Complex from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Ul30_chain_c (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (576 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (491 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- El13_chain_i (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : PARENTAL STRAIN
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8ova
Q-score: 0.63
Rajan KS, Madmoni H, Bashan A, Taoka M, Aryal S, Nobe Y, Doniger T, Galili Kostin B, Blumberg A, Cohen-Chalamish S, Schwartz S, Rivalta A, Zimmerman E, Unger R, Isobe T, Yonath A, Michaeli S
Nat Commun (2023) 14 pp. 7462-7462 [ DOI: doi:10.1038/s41467-023-43263-6 Pubmed: 37985661 ]
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l32, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s10 (13 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l44 (12 kDa, Protein from Trypanosoma brucei brucei)
- 5.8s rrna (67 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s10, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein l14, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Trypanosoma brucei brucei)
- Rna-binding protein (30 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal subunit protein l31, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s21, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l19, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- E-site trna (6 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma brucei brucei)
- Lsua rrna (619 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23a (18 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s14 (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein l28, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35a, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal proteins s11, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein sa (31 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-1 (69 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s3a (29 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l30 (11 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3, mitochondrial, putative (48 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l29 (8 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13 (25 kDa, Protein from Trypanosoma brucei brucei)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l4 (41 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l41 (4 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l15 (26 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l11, putative (22 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-2 (59 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l22, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13a, putative (25 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-4 (43 kDa, RNA from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- 60s ribosomal protein l21e, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Us14 (6 kDa, Protein from Trypanosoma brucei brucei)
- 5s rrna (38 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s16, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l37a, putative (10 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l24, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l36, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27a (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- Probable 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma brucei brucei)
- Cryo-em structure of trypanosoma brucei procyclic form 80s ribosome : parental strain (Complex from Trypanosoma brucei brucei)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l26, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l34, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l38, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l17, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s33, putative (11 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18a (20 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l37 (10 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18 (21 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s7 (23 kDa, Protein from Trypanosoma brucei brucei)
- Ssu rrna (734 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l27 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7a (30 kDa, Protein from Trypanosoma brucei brucei)
- Srrna-6 (24 kDa, RNA from Trypanosoma brucei brucei)
- Lsub rrna (494 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Trypanosoma brucei brucei)
CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ove
Q-score: 0.605
Rajan KS, Madmoni H, Bashan A, Taoka M, Aryal S, Nobe Y, Doniger T, Galili Kostin B, Blumberg A, Cohen-Chalamish S, Schwartz S, Rivalta A, Zimmerman E, Unger R, Isobe T, Yonath A, Michaeli S
Nat Commun (2023) 14 pp. 7462-7462 [ DOI: doi:10.1038/s41467-023-43263-6 Pubmed: 37985661 ]
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l34, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 80s ribosome (Complex from Trypanosoma brucei brucei)
- 40s ribosomal protein s21, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l30 (11 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15a, putative (14 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l35a, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l19, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein l14, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l29 (8 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma brucei brucei)
- Lsub rrna (494 kDa, RNA from Trypanosoma brucei brucei)
- Ribosomal protein s10 (13 kDa, Protein from Trypanosoma brucei brucei)
- Srrna 6 (24 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l27a (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s10, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l36, putative (12 kDa, Protein from Trypanosoma brucei brucei)
- E-site trna (6 kDa, RNA from Trypanosoma brucei brucei)
- 40s ribosomal protein s3a (29 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7a (30 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l38, putative (9 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l11, putative (22 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal proteins s11, putative (20 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l28, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l32, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s33, putative (11 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l37 (10 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal subunit protein l31, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18a (20 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l21e, putative (18 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l26, putative (16 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l6, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Putative ribosomal protein s29 (6 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l17, putative (19 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l27 (15 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l41 (4 kDa, Protein from Trypanosoma brucei brucei)
- 5s rrna (38 kDa, RNA from Trypanosoma brucei brucei)
- Ribosomal protein l15 (26 kDa, Protein from Trypanosoma brucei brucei)
- 5.8s rrna (67 kDa, RNA from Trypanosoma brucei brucei)
- Srrna 4 (43 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l22, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l44 (12 kDa, Protein from Trypanosoma brucei brucei)
- His-thr-cys-thr (461 Da, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3, mitochondrial, putative (48 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l24 (14 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13a, putative (25 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s16, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s14 (15 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ssu rrna (734 kDa, RNA from Trypanosoma brucei brucei)
- Rna-binding protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Srrna 2 (59 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l35, putative (15 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l13 (25 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l23a (18 kDa, Protein from Trypanosoma brucei brucei)
- Potassium ion (39 Da, Ligand)
- Lus_alpha rrna (619 kDa, RNA from Trypanosoma brucei brucei)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein sa (31 kDa, Protein from Trypanosoma brucei brucei)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Trypanosoma brucei brucei)
- Probable 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l4 (41 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s7 (23 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma brucei brucei)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l18 (21 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l2, putative (28 kDa, Protein from Trypanosoma brucei brucei)
- 60s ribosomal protein l7, putative (29 kDa, Protein from Trypanosoma brucei brucei)
- Srrna 1 (69 kDa, RNA from Trypanosoma brucei brucei)
- 60s ribosomal protein l37a, putative (10 kDa, Protein from Trypanosoma brucei brucei)
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8a98
Q-score: 0.653
Rajan KS, Aryal S, Hiregange DG, Bashan A, Madmoni H, Olami M, Doniger T, Cohen-Chalamish S, Pescher P, Taoka M, Nobe Y, Fedorenko A, Bose T, Zimermann E, Prina E, Aharon-Hefetz N, Pilpel Y, Isobe T, Unger R, Spath GF, Yonath A, Michaeli S
Cell Rep (2024) 43 pp. 114203-114203 [ DOI: doi:10.1016/j.celrep.2024.114203 Pubmed: 38722744 ]
- 40s ribosomal protein s24 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l11 (21 kDa, Protein from Leishmania major strain Friedlin)
- Lsua_rrna_chain_1 (577 kDa, RNA from Leishmania major strain Friedlin)
- Sr4_chain_5 (43 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l28 (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l22 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s6 (28 kDa, Protein from Leishmania major strain Friedlin)
- Sr6_chain_6 (23 kDa, RNA from Leishmania major strain Friedlin)
- 40s ribosomal protein s2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l2 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l21 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s18 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative rna binding protein (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l35 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s21 (17 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s26 (12 kDa, Protein from Leishmania major strain Friedlin)
- Lsub_rrna_chain_2 (492 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s19-like protein (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l3 (47 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l44 (12 kDa, Protein from Leishmania major strain Friedlin)
- 5.8s_rrna_chain_7 (54 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein s20 (13 kDa, Protein from Leishmania major strain Friedlin)
- Ssu_rrna_chain_s1 (710 kDa, RNA from Leishmania major strain Friedlin)
- 60s ribosomal protein l30 (11 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l19 (28 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l9 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s33 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l23 (14 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15a (14 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s3a (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l24 (14 kDa, Protein from Leishmania major strain Friedlin)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l27 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein sa (27 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l6 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s10 (18 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s13 (17 kDa, Protein from Leishmania major strain Friedlin)
- Sr2_chain_4 (59 kDa, RNA from Leishmania major strain Friedlin)
- Putative ribosomal protein l1a (41 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s17 (16 kDa, Protein from Leishmania major strain Friedlin)
- Ribosomal protein l37 (9 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l29 (8 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l7 (28 kDa, Protein from Leishmania major strain Friedlin)
- Sr1_chain_3 (69 kDa, RNA from Leishmania major strain Friedlin)
- Sodium ion (22 Da, Ligand)
- Putative ribosomal protein s29 (6 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l26 (16 kDa, Protein from Leishmania major strain Friedlin)
- Cryo-em structure of leishmania major 80s ribosome snorna mutant (Complex from Leishmania major strain Friedlin)
- 60s ribosomal protein l18 (22 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l36 (11 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s14 (15 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l7a (29 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s15 (17 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s23 (15 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l39 (6 kDa, Protein from Leishmania major strain Friedlin)
- Water (18 Da, Ligand)
- Putative 60s ribosomal protein l34 (19 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l5 (34 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s27-1 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l35a (16 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l13a (25 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l17 (19 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s8 (24 kDa, Protein from Leishmania major strain Friedlin)
- E-site_trna_chain_s4 (6 kDa, RNA from Leishmania major strain Friedlin)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s4 (30 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Leishmania major strain Friedlin)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Leishmania major strain Friedlin)
- Potassium ion (39 Da, Ligand)
- El13_chain_i (24 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s3 (24 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s12 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s7 (23 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s30 (7 kDa, Protein from Leishmania major strain Friedlin)
- Putative 60s ribosomal subunit protein l31 (21 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein l14 (19 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l41 (4 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s11 (20 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s5 (21 kDa, Protein from Leishmania major strain Friedlin)
- 60s ribosomal protein l32 (15 kDa, Protein from Leishmania major strain Friedlin)
- 40s ribosomal protein s25 (13 kDa, Protein from Leishmania major strain Friedlin)
- Putative ribosomal protein l38 (9 kDa, Protein from Leishmania major strain Friedlin)
- Putative 40s ribosomal protein s16 (16 kDa, Protein from Leishmania major strain Friedlin)
- 5s_rrna_chain_8 (39 kDa, RNA from Leishmania major strain Friedlin)
- Putative 60s ribosomal protein l27a/l29 (16 kDa, Protein from Leishmania major strain Friedlin)
The mitochondrial ribosome from Tetrahymena thermophila
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6z1p
Q-score: 0.383
eLife (2020) 9 [ DOI: doi:10.7554/eLife.59264 Pubmed: 32553108 ]
- Ymf61 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl19m (28 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l33 (7 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l27 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s3 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms84,ms84 (10 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms26 (69 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms87 (127 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Enoyl-coa hydratase/isomerase (171 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms93 (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l23, putative (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l17 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s13 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms85 (120 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms91 (24 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf60 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms82 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms45 (54 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l51/s25/ci-b8 domain protein (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l13 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml53 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s9 (87 kDa, Protein from Tetrahymena thermophila (strain SB210))
- The mitochondrial ribosome from tetrahymena thermophila (4 MDa, Complex from Tetrahymena thermophila SB210)
- Ms38 (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms76 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal death-associated protein (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s5 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l22/l17e (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s14 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Large subunit ribosomal protein (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf74 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l24 (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl25m (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s19 (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf63 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms23 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms79 (30 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Igr motif protein (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_1 (89 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Iron-binding zinc finger cdgsh type protein (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml103 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf69 (8 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml40 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms90 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms34 (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf73 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Signal peptide-binding domain protein (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bs21m (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l16 (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf76 (50 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml64 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s6 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l3 (49 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 39-s ribosomal protein l47 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s17 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal subunit protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms81 (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ribosomal protein l11, amine-terminal domain protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron donor protein cyay (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms75 (1 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf64 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l27 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms78 (179 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Zinc ion (65 Da, Ligand)
- Ribosomal protein l9, amine-terminal domain protein (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml54 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Parp alpha-helical domain-containing protein,ms83 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl32m (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms89 (51 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/l12m (9 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l20 (20 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml102 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l15, putative (34 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml101 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms77 (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_2 (743 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ml106 (57 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_2 (448 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Selr domain protein (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l4 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l14 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l21 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml46 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms88 (25 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms31 (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s12 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s18 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s16 (52 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms37 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s15 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl35m (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_1 (62 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l7/l12 carboxy-terminal domain protein (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml104 (90 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l2 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l28 (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf59 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms33 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
Structure of RelA bound to the 70S ribosome (overall map, class 1)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 5iqr
Q-score: 0.45
Brown A, Fernandez IS, Gordiyenko Y, Ramakrishnan V
Nature (2016) 534 pp. 277-280 [ DOI: doi:10.1038/nature17675 Pubmed: 27279228 ]
- Ribosome (Complex from Escherichia coli K-12)
- Gtp pyrophosphokinase (83 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- Lsu rrna (941 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- A/t trna(phe) (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- Ssu rrna (497 kDa, RNA from Escherichia coli K-12)
- 5s rrna (38 kDa, RNA from Escherichia coli K-12)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- Methionine (149 Da, Ligand)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- P-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli K-12)
- Paromomycin (615 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- Mrna (3 kDa, RNA from synthetic construct)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- E-site trna(phe) (24 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)