The mitochondrial ribosome from Tetrahymena thermophila
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6z1p
Q-score: 0.383
eLife (2020) 9 [ DOI: doi:10.7554/eLife.59264 Pubmed: 32553108 ]
- Ms81 (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms91 (24 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms23 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms93 (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l13 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/l12m (9 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l17 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms82 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl25m (37 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml46 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl7/12m (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l33 (7 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml54 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- The mitochondrial ribosome from tetrahymena thermophila (4 MDa, Complex from Tetrahymena thermophila SB210)
- Ssu rrna_1 (62 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l2 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms77 (5 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l9, amine-terminal domain protein (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s15 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s12 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l51/s25/ci-b8 domain protein (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l27 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms33 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s18 (63 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml102 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Lsu rrna_2 (743 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Lsu rrna_1 (89 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ymf73 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l15, putative (34 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l16 (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l23, putative (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl32m (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l27 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s14 (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms79 (30 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Selr domain protein (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms45 (54 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s3 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml64 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms78 (179 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Signal peptide-binding domain protein (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml53 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l24 (26 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf76 (50 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Enoyl-coa hydratase/isomerase (171 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms87 (127 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal subunit protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 39-s ribosomal protein l47 (36 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l3 (49 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Igr motif protein (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l22/l17e (42 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms38 (3 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms88 (25 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl35m (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms85 (120 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf59 (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf61 (29 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf69 (8 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms26 (69 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms34 (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Large subunit ribosomal protein (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms37 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l21 (27 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml40 (23 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l20 (20 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms90 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml103 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s13 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s16 (52 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml106 (57 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf74 (19 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron donor protein cyay (16 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s9 (87 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l7/l12 carboxy-terminal domain protein (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms31 (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms84,ms84 (10 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf64 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s5 (40 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Parp alpha-helical domain-containing protein,ms83 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bs21m (12 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s6 (15 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l28 (35 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms89 (51 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ssu rrna_2 (448 kDa, RNA from Tetrahymena thermophila (strain SB210))
- Ribosomal protein s19 (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l14 (13 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein (11 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 30s ribosomal protein s17 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf63 (33 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Iron-binding zinc finger cdgsh type protein (18 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms75 (1 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ymf60 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ms76 (21 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal death-associated protein (83 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Magnesium ion (24 Da, Ligand)
- Ml101 (45 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ribosomal protein l11, amine-terminal domain protein (17 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Bl19m (28 kDa, Protein from Tetrahymena thermophila (strain SB210))
- Ml104 (90 kDa, Protein from Tetrahymena thermophila (strain SB210))
- 50s ribosomal protein l4 (41 kDa, Protein from Tetrahymena thermophila (strain SB210))
Structure of RelA bound to the 70S ribosome (overall map, class 1)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 5iqr
Q-score: 0.45
Brown A, Fernandez IS, Gordiyenko Y, Ramakrishnan V
Nature (2016) 534 pp. 277-280 [ Pubmed: 27279228 DOI: doi:10.1038/nature17675 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- A/t trna(phe) (24 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- E-site trna(phe) (24 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- Ribosome (Complex from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- Mrna (3 kDa, RNA from synthetic construct)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Gtp pyrophosphokinase (83 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- P-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Ssu rrna (497 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 5s rrna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- Paromomycin (615 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
- Lsu rrna (941 kDa, RNA from Escherichia coli K-12)