cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom resolution
Resolution: 1.71 Å
EM Method: Single-particle
Fitted PDBs: 9evx
Q-score: 0.749
Hussein R, Graca A, Forsman J, Aydin AO, Hall M, Gaetcke J, Chernev P, Wendler P, Dobbek H, Messinger J, Zouni A, Schroder WP
Science (2024) 384 pp. 1349-1355 [ Pubmed: 38900892 DOI: doi:10.1126/science.adn6541 ]
- Photosystem ii reaction center x protein (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii 12 kda extrinsic protein (15 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein z (6 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Heme c (618 Da, Ligand)
- Dimeric core complex of psii dpsii (750 MDa, Complex from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein j (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein m (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Thermosynechococcus vestitus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome b559 subunit beta (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein l (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein t (3 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Water (18 Da, Ligand)
- Photosystem ii protein d1 1 (38 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii manganese-stabilizing polypeptide (29 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Stearic acid (284 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein h (7 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Cytochrome c-550 (18 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Photosystem ii reaction center protein i (4 kDa, Protein from Thermosynechococcus vestitus BP-1)
Cryo-EM structure of coxsackievirus A6 mature virion
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7qw9
Q-score: 0.588
Buttner CR, Spurny R, Fuzik T, Plevka P
Commun Biol (2022) 5 pp. 898-898 [ Pubmed: 36056184 DOI: doi:10.1038/s42003-022-03863-2 ]
- Stearic acid (284 Da, Ligand)
- Coxsackievirus a6 (8 MDa, Virus from Coxsackievirus A6)
- Myristic acid (228 Da, Ligand)
- Capsid (Complex from Coxsackievirus A6)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A6)
Cryo-EM structure of an alphavirus, Getah virus
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 7fd2
Q-score: 0.452
Wang A, Zhou F, Liu C, Gao D, Qi R, Yin Y, Liu S, Gao Y, Fu L, Xia Y, Xu Y, Wang C, Liu Z
Cell Discov (2022) 8 pp. 12-12 [ DOI: doi:10.1038/s41421-022-00374-6 Pubmed: 35149682 ]
- Capsid protein (30 kDa, Protein from Getah virus)
- Envelope glycoprotein 2 (46 kDa, Protein from Getah virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Envelope glycoprotein 1 (47 kDa, Protein from Getah virus)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Stearic acid (284 Da, Ligand)
- Getah virus (Virus from Getah virus)
Locked Wuhan SARS-CoV2 Prefusion Spike ectodomain with lipid bound
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7z3z
Q-score: 0.547
Duyvesteyn HME, Carrique L, Ren J, Stuart DI, Fry EE, Zhao Y, Malinauskas T, Zhou D
bioRxiv (2020) [ DOI: doi:10.1101/2020.08.13.249177 ]
- Sars-cov-2 spike glycoprotein in locked conformation with lipid bound (142 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Stearic acid (284 Da, Ligand)