human NaS1 intermediate state 2
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8y5w
Q-score: 0.579
Chen X, Zhang Y, Yin J, Liu C, Xie M, Wang Y, Chen M, Zhang R, Yuan X, Li D, Chen X, Gao X, Cai G, Zhang S, Zhou B, Yang M
Sci Adv (2024) 10 pp. eado6778-eado6778 [ DOI: doi:10.1126/sciadv.ado6778 Pubmed: 39576865 ]
- Sodium ion (22 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
- Solute carrier family 13 member 1 (66 kDa, Protein from Homo sapiens)
- Membrane sodium anion transproter 2 (Complex from Homo sapiens)
The MicroED structure of proteinase K crystallized by suspended drop crystallization
Resolution: 2.1 Å
EM Method: Electron Crystallography
Fitted PDBs: 8sdk
Q-score: 0.739
Gillman C, Nicolas WJ, Martynowycz MW, Gonen T
IUCrJ (2023) 10 pp. 430-436 [ DOI: doi:10.1107/S2052252523004141 Pubmed: 37223996 ]
- Proteinase k (28 kDa, Protein from Parengyodontium album)
- Proteinase k from tritirachium album (28 kDa, Cellular component from Parengyodontium album)
- Water (18 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gxu
Q-score: 0.582
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- 1 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gxw
Q-score: 0.539
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- 2 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gxy
Q-score: 0.56
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- 2 sulfate-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
H. sapiens replisome-CUL2/LRR1 complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7plo
Q-score: 0.415
Jenkyn-Bedford M, Jones ML, Baris Y, Labib KPM, Cannone G, Yeeles JTP, Deegan TD
Nature (2021) 600 pp. 743-747 [ DOI: doi:10.1038/s41586-021-04145-3 Pubmed: 34700328 ]
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Timeless-interacting protein (34 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Leading strand dna (26 kDa, DNA from Homo sapiens)
- Protein timeless homolog (138 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Dna polymerase epsilon subunit 2 (59 kDa, Protein from Homo sapiens)
- Human replisome engaged with cul2-lrr1 (Complex from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf1 (23 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein sld5 (30 kDa, Protein from Homo sapiens)
- Wd repeat and hmg-box dna-binding protein 1 (130 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf2 (21 kDa, Protein from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- Dna polymerase epsilon catalytic subunit a (261 kDa, Protein from Homo sapiens)
- Elongin-b (13 kDa, Protein from Homo sapiens)
- Cell division control protein 45 homolog (66 kDa, Protein from Homo sapiens)
- Cullin-2 (87 kDa, Protein from Homo sapiens)
- Elongin-c (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Claspin (155 kDa, Protein from Homo sapiens)
- Lagging strand dna (12 kDa, DNA from Homo sapiens)
- Leucine-rich repeat protein 1 (46 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf3 (24 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7rpk
Q-score: 0.547
Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA
Nature (2021) 599 pp. 320-324 [ DOI: doi:10.1038/s41586-021-03996-0 Pubmed: 34707294 ]
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Water (18 Da, Ligand)
- Dispatched protein complexed with sonic hedgehog 26-189 (151 kDa, Complex from Mus musculus)
- (2s)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate (411 Da, Ligand)
- Protein dispatched homolog 1 (152 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
- Sonic hedgehog protein (18 kDa, Protein from Mus musculus)
- Sodium ion (22 Da, Ligand)
Structure of Arabidopsis thaliana sulfate transporter AtSULTR4;1
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7lhv
Q-score: 0.501
Nat Commun (2021) 12 pp. 4455-4455 [ DOI: doi:10.1038/s41467-021-24778-2 Pubmed: 34294705 ]
- Sulfate transporter 4;1 (70 kDa, Complex from Arabidopsis thaliana)
- (2s,3r,4e)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate (379 Da, Ligand)
- Sulfate transporter 4.1, chloroplastic (75 kDa, Protein from Arabidopsis thaliana)
- Water (18 Da, Ligand)
- 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (760 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
Resolution: 2.23 Å
EM Method: Single-particle
Fitted PDBs: 6thd
Q-score: 0.738
Chandler-Bostock R, Mata CP, Bingham RJ, Dykeman EC, Meng B, Tuthill TJ, Rowlands DJ, Ranson NA, Twarock R, Stockley PG
PLoS Pathog (2020) 16 pp. e1009146-e1009146 [ DOI: doi:10.1371/journal.ppat.1009146 Pubmed: 33370422 ]
- Genome polyprotein (31 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Genome polyprotein (27 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Water (18 Da, Ligand)
- Bovine enterovirus (strain vg-5-27) (Virus from Bovine enterovirus (strain VG-5-27))
- Genome polyprotein (5 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Genome polyprotein (26 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Myristic acid (228 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6thn
Q-score: 0.664
Chandler-Bostock R, Mata CP, Bingham RJ, Dykeman EC, Meng B, Tuthill TJ, Rowlands DJ, Ranson NA, Twarock R, Stockley PG
PLoS Pathog (2020) 16 pp. e1009146-e1009146 [ DOI: doi:10.1371/journal.ppat.1009146 Pubmed: 33370422 ]
- Genome polyprotein (31 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Genome polyprotein (27 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Bovine enterovirus strain vg-5-27 (Virus from Bovine enterovirus strain VG-5-27)
- Water (18 Da, Ligand)
- Rna peak 9 bernoulli plot (3 kDa, RNA from Bovine enterovirus strain VG-5-27)
- Genome polyprotein (5 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Genome polyprotein (26 kDa, Protein from Bovine enterovirus (strain VG-5-27))
- Myristic acid (228 Da, Ligand)
- Sulfate ion (96 Da, Ligand)