Human diastrophic dysplasia sulfate transporter SLC26A2
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7xlm
Q-score: 0.468
Chi XM, Li XR, Huang BD, Zhou Q
Dian Zi Xian Wei Xue Bao (2023) 42 [ DOI: doi:10.3969/j.issn.1000-6281.2023.01.004 ]
- Sulfate ion (96 Da, Ligand)
- Human diastrophic dysplasia sulfate transporter slc26a2 (130 kDa, Complex from Homo sapiens)
- Sulfate transporter (88 kDa, Protein from Homo sapiens)
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gxu
Q-score: 0.582
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- 1 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gxw
Q-score: 0.539
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- 2 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gxy
Q-score: 0.56
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- 2 sulfate-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gxz
Q-score: 0.488
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- 1 sulfate and 1 atp bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pfo
Q-score: 0.391
Jones ML, Baris Y, Taylor MRG, Yeeles JTP
EMBO J (2021) 40 pp. e108819-e108819 [ DOI: doi:10.15252/embj.2021108819 Pubmed: 34694004 ]
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Timeless-interacting protein (34 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Leading strand dna (26 kDa, DNA from Homo sapiens)
- Protein timeless homolog (138 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Dna polymerase epsilon subunit 2 (59 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf1 (23 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein sld5 (30 kDa, Protein from Homo sapiens)
- Wd repeat and hmg-box dna-binding protein 1 (130 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf2 (21 kDa, Protein from Homo sapiens)
- Lagging strand dna (16 kDa, DNA from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- Core human replisome (Complex from Homo sapiens)
- Dna polymerase epsilon catalytic subunit a (261 kDa, Protein from Homo sapiens)
- Cell division control protein 45 homolog (66 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Claspin (155 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf3 (24 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
H. sapiens replisome-CUL2/LRR1 complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7plo
Q-score: 0.415
Jenkyn-Bedford M, Jones ML, Baris Y, Labib KPM, Cannone G, Yeeles JTP, Deegan TD
Nature (2021) 600 pp. 743-747 [ DOI: doi:10.1038/s41586-021-04145-3 Pubmed: 34700328 ]
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Timeless-interacting protein (34 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Leading strand dna (26 kDa, DNA from Homo sapiens)
- Protein timeless homolog (138 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Dna polymerase epsilon subunit 2 (59 kDa, Protein from Homo sapiens)
- Human replisome engaged with cul2-lrr1 (Complex from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf1 (23 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein sld5 (30 kDa, Protein from Homo sapiens)
- Wd repeat and hmg-box dna-binding protein 1 (130 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf2 (21 kDa, Protein from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- Dna polymerase epsilon catalytic subunit a (261 kDa, Protein from Homo sapiens)
- Elongin-b (13 kDa, Protein from Homo sapiens)
- Cell division control protein 45 homolog (66 kDa, Protein from Homo sapiens)
- Cullin-2 (87 kDa, Protein from Homo sapiens)
- Elongin-c (12 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Claspin (155 kDa, Protein from Homo sapiens)
- Lagging strand dna (12 kDa, DNA from Homo sapiens)
- Leucine-rich repeat protein 1 (46 kDa, Protein from Homo sapiens)
- Dna replication complex gins protein psf3 (24 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Cryo-EM structure of murine Dispatched in complex with Sonic hedgehog
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7rpk
Q-score: 0.547
Wang Q, Asarnow DE, Ding K, Mann RK, Hatakeyama J, Zhang Y, Ma Y, Cheng Y, Beachy PA
Nature (2021) 599 pp. 320-324 [ DOI: doi:10.1038/s41586-021-03996-0 Pubmed: 34707294 ]
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Water (18 Da, Ligand)
- Dispatched protein complexed with sonic hedgehog 26-189 (151 kDa, Complex from Mus musculus)
- (2s)-3-{[(s)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate (411 Da, Ligand)
- Protein dispatched homolog 1 (152 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
- Sonic hedgehog protein (18 kDa, Protein from Mus musculus)
- Sodium ion (22 Da, Ligand)
Structure of Arabidopsis thaliana sulfate transporter AtSULTR4;1
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7lhv
Q-score: 0.501
Nat Commun (2021) 12 pp. 4455-4455 [ DOI: doi:10.1038/s41467-021-24778-2 Pubmed: 34294705 ]
- Sulfate transporter 4;1 (70 kDa, Complex from Arabidopsis thaliana)
- (2s,3r,4e)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate (379 Da, Ligand)
- Sulfate transporter 4.1, chloroplastic (75 kDa, Protein from Arabidopsis thaliana)
- Water (18 Da, Ligand)
- 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (760 Da, Ligand)
- Sulfate ion (96 Da, Ligand)
Structure of native royal jelly filaments
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7asd
Q-score: 0.464
Mattei S, Ban A, Picenoni A, Leibundgut M, Glockshuber R, Boehringer D
Nat Commun (2020) 11 pp. 6267-6267 [ Pubmed: 33293513 DOI: doi:10.1038/s41467-020-20135-x ]
- Major royal jelly protein 1 (48 kDa, Protein from Apis mellifera)
- (3beta,14beta,17alpha)-ergosta-5,24(28)-dien-3-ol (398 Da, Ligand)
- Apisimin (7 kDa, Protein from Apis mellifera)
- Native royal jelly filaments (Complex from Apis mellifera)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sulfate ion (96 Da, Ligand)