The DSR2-DSAD1 complex with DSAD1 on the opposite sides
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8ykf
Q-score: 0.37
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
- Dsad1 (13 kDa, Protein from Bacillus phage SPBc2)
- The dsr2-dsad1 complex with dsad1 on the opposite sides (Complex from Bacillus subtilis)
The DSR2-DSAD1 complex with DSAD1 on the same sides
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
- The dsr2-dsad1 complex with dsad1 on the same sides (Complex from Bacillus subtilis)
- Dsad1 (13 kDa, Protein from Bacillus phage SPbeta)
The structure of DSR2-Tail tube complex
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis)
- Bacillus phage spr tube protein (29 kDa, Protein from Bacillus phage SPR)
- The complex of dsr2 and tail tube (Complex from Bacillus subtilis)
The structure of DSR2 and NAD+ complex
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
The tetramer complex of DSR2 and tube-forming domain of phage tail tube protein
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis subsp. natto (strain BEST195))
- Bacillus phage spr tube protein (29 kDa, Protein from Bacillus phage SPR)
- The tetramer complex of dsr2 and tube-forming domain of phage tail tube protein (Complex from Bacillus subtilis subsp. natto (strain BEST195))
The dimer complex of DSR2 and tube-forming domain of phage tail tube protein
Int J Biol Macromol (2024) 277 pp. 134145-134145 [ Pubmed: 39059542 DOI: doi:10.1016/j.ijbiomac.2024.134145 ]
- Sir2-like domain-containing protein (118 kDa, Protein from Bacillus subtilis subsp. natto BEST195)
- The dimer complex of dsr2 and tube-forming domain of phage tail tube protein (Complex from Bacillus subtilis subsp. natto (strain BEST195))
- Bacillus phage spr tube protein (29 kDa, Protein from Bacillus phage SPR)
Dimer structure of procaryotic Ago
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k87
Q-score: 0.475
Sun D, Zhu K, Wang L, Mu Z, Wu K, Hua L, Qin B, Gao X, Wang Y, Cui S
Cell Rep (2024) 43 pp. 114391-114391 [ Pubmed: 38923459 DOI: doi:10.1016/j.celrep.2024.114391 ]
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Dimmeric gssirt2/ago-gran-tdna complex (Complex from Geobacter sulfurreducens)
- Dna (41-mer) (12 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Rna/dna (21-mer) (6 kDa, Macromolecule from synthetic construct)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8k88
Q-score: 0.548
Sun D, Zhu K, Wang L, Mu Z, Wu K, Hua L, Qin B, Gao X, Wang Y, Cui S
Cell Rep (2024) 43 pp. 114391-114391 [ Pubmed: 38923459 DOI: doi:10.1016/j.celrep.2024.114391 ]
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Short prokaryotic argonaute associated sir2 (120 MDa, Complex from Geobacter sulfurreducens)
- Dna/rna (21-mer) (6 kDa, Macromolecule from synthetic construct)
- Dna (41-mer) (12 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkz
Q-score: 0.475
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- Sir2/ago (Complex from Geobacter sulfurreducens PCA)
- Ago (Complex)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
Cryo-EM structure of the prokaryotic SPARSA system complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jl0
Q-score: 0.547
Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S
Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens)
- The sir2/ago/guide rna/recognition dna complex (Complex from Geobacter sulfurreducens PCA)
- Dna/guide rna duplex (Complex)
- Rna (5'-r(p*ap*up*ap*ap*up*gp*gp*up*up*up*cp*up*up*ap*gp*ap*cp*gp*up*cp*gp*u)-3') (6 kDa, RNA from synthetic construct)
- Ago (Complex)
- Dna (5'-d(p*ap*cp*gp*ap*cp*gp*tp*cp*tp*ap*ap*gp*ap*ap*ap*cp*cp*ap*tp*tp*ap*t)-3') (6 kDa, DNA from synthetic construct)
- Sir2 (Complex from Geobacter sulfurreducens PCA)
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens)