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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"SmD2" AND author_name:"Bai" AND author_name:"Shw"

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Showing 1 - 6 of 6. Page 1 of 1

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EMD-8006

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The open state of the yeast U4/U6.U5 tri-snRNP at 4.2 Angstrom

Release date: March 30, 2016
Resolution: 4.2 Å
EM Method: Single-particle

Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Snu114 (97 kDa, Protein from Saccharomyces cerevisiae)
Smd2 (11 kDa, Protein from Saccharomyces cerevisiae)
Smf (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm8 (7 kDa, Protein from Saccharomyces cerevisiae)
U5 sme (8 kDa, Protein from Saccharomyces cerevisiae)
U5 smd1 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp4 (39 kDa, Protein from Saccharomyces cerevisiae)
Snu13 (13 kDa, Protein from Saccharomyces cerevisiae)
Lsm6 (8 kDa, Protein from Saccharomyces cerevisiae)
Snu66 (24 kDa, Protein from Saccharomyces cerevisiae)
Smb (9 kDa, Protein from Saccharomyces cerevisiae)
Brr2 (202 kDa, Protein from Saccharomyces cerevisiae)
Smd3 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp8 (255 kDa, Protein from Saccharomyces cerevisiae)
Sme (8 kDa, Protein from Saccharomyces cerevisiae)
Tri-snrnp complex with 30 proteins and 3 snrna (1 MDa, Complex from Saccharomyces cerevisiae)
U4 smd1 (10 kDa, Protein from Saccharomyces cerevisiae)
Lsm5 (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm2 (10 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna (25 kDa, RNA from Saccharomyces cerevisiae)
U4 snrna (39 kDa, RNA from Saccharomyces cerevisiae)
Lsm3 (8 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (45 kDa, RNA from Saccharomyces cerevisiae)
Lsm4 (8 kDa, Protein from Saccharomyces cerevisiae)
Unknown proteins (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm7 (7 kDa, Protein from Saccharomyces cerevisiae)
Prp31 (47 kDa, Protein from Saccharomyces cerevisiae)
Smg (7 kDa, Protein from Saccharomyces cerevisiae)
Prp3 (37 kDa, Protein from Saccharomyces cerevisiae)
Prp6 (84 kDa, Protein from Saccharomyces cerevisiae)
Dib1 (16 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-8007

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The closed state of the yeast spliceosomal U4/U6.U5 tri-snRNP at 4.3 Angstrom

Release date: March 30, 2016
Resolution: 4.3 Å
EM Method: Single-particle

Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Snu114 (97 kDa, Protein from Saccharomyces cerevisiae)
Smd2 (11 kDa, Protein from Saccharomyces cerevisiae)
Smf (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm8 (7 kDa, Protein from Saccharomyces cerevisiae)
U5 sme (8 kDa, Protein from Saccharomyces cerevisiae)
U5 smd1 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp4 (39 kDa, Protein from Saccharomyces cerevisiae)
Snu13 (13 kDa, Protein from Saccharomyces cerevisiae)
Lsm6 (8 kDa, Protein from Saccharomyces cerevisiae)
Snu66 (24 kDa, Protein from Saccharomyces cerevisiae)
Smb (9 kDa, Protein from Saccharomyces cerevisiae)
Brr2 (202 kDa, Protein from Saccharomyces cerevisiae)
Smd3 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp8 (255 kDa, Protein from Saccharomyces cerevisiae)
Sme (8 kDa, Protein from Saccharomyces cerevisiae)
Tri-snrnp complex with 30 proteins and 3 snrna (1 MDa, Complex from Saccharomyces cerevisiae)
U4 smd1 (10 kDa, Protein from Saccharomyces cerevisiae)
Lsm5 (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm2 (10 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna (25 kDa, RNA from Saccharomyces cerevisiae)
U4 snrna (39 kDa, RNA from Saccharomyces cerevisiae)
Lsm3 (8 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (45 kDa, RNA from Saccharomyces cerevisiae)
Lsm4 (8 kDa, Protein from Saccharomyces cerevisiae)
Unknown proteins (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm7 (7 kDa, Protein from Saccharomyces cerevisiae)
Prp31 (47 kDa, Protein from Saccharomyces cerevisiae)
Smg (7 kDa, Protein from Saccharomyces cerevisiae)
Prp3 (37 kDa, Protein from Saccharomyces cerevisiae)
Prp6 (84 kDa, Protein from Saccharomyces cerevisiae)
Dib1 (16 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-8008

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Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 1

Release date: March 30, 2016
Resolution: 4.6 Å
EM Method: Single-particle

Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Snu114 (97 kDa, Protein from Saccharomyces cerevisiae)
Smd2 (11 kDa, Protein from Saccharomyces cerevisiae)
Smf (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm8 (7 kDa, Protein from Saccharomyces cerevisiae)
U5 sme (8 kDa, Protein from Saccharomyces cerevisiae)
U5 smd1 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp4 (39 kDa, Protein from Saccharomyces cerevisiae)
Snu13 (13 kDa, Protein from Saccharomyces cerevisiae)
Lsm6 (8 kDa, Protein from Saccharomyces cerevisiae)
Snu66 (24 kDa, Protein from Saccharomyces cerevisiae)
Smb (9 kDa, Protein from Saccharomyces cerevisiae)
Brr2 (202 kDa, Protein from Saccharomyces cerevisiae)
Smd3 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp8 (255 kDa, Protein from Saccharomyces cerevisiae)
Sme (8 kDa, Protein from Saccharomyces cerevisiae)
Tri-snrnp complex with 30 proteins and 3 snrna (1 MDa, Complex from Saccharomyces cerevisiae)
U4 smd1 (10 kDa, Protein from Saccharomyces cerevisiae)
Lsm5 (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm2 (10 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna (25 kDa, RNA from Saccharomyces cerevisiae)
U4 snrna (39 kDa, RNA from Saccharomyces cerevisiae)
Lsm3 (8 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (45 kDa, RNA from Saccharomyces cerevisiae)
Lsm4 (8 kDa, Protein from Saccharomyces cerevisiae)
Unknown proteins (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm7 (7 kDa, Protein from Saccharomyces cerevisiae)
Prp31 (47 kDa, Protein from Saccharomyces cerevisiae)
Smg (7 kDa, Protein from Saccharomyces cerevisiae)
Prp3 (37 kDa, Protein from Saccharomyces cerevisiae)
Prp6 (84 kDa, Protein from Saccharomyces cerevisiae)
Dib1 (16 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-8009

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Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 2

Release date: March 30, 2016
Resolution: 4.5 Å
EM Method: Single-particle

Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Snu114 (97 kDa, Protein from Saccharomyces cerevisiae)
Smd2 (11 kDa, Protein from Saccharomyces cerevisiae)
Smf (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm8 (7 kDa, Protein from Saccharomyces cerevisiae)
U5 sme (8 kDa, Protein from Saccharomyces cerevisiae)
U5 smd1 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp4 (39 kDa, Protein from Saccharomyces cerevisiae)
Snu13 (13 kDa, Protein from Saccharomyces cerevisiae)
Lsm6 (8 kDa, Protein from Saccharomyces cerevisiae)
Snu66 (24 kDa, Protein from Saccharomyces cerevisiae)
Smb (9 kDa, Protein from Saccharomyces cerevisiae)
Brr2 (202 kDa, Protein from Saccharomyces cerevisiae)
Smd3 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp8 (255 kDa, Protein from Saccharomyces cerevisiae)
Sme (8 kDa, Protein from Saccharomyces cerevisiae)
Tri-snrnp complex with 30 proteins and 3 snrna (1 MDa, Complex from Saccharomyces cerevisiae)
U4 smd1 (10 kDa, Protein from Saccharomyces cerevisiae)
Lsm5 (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm2 (10 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna (25 kDa, RNA from Saccharomyces cerevisiae)
U4 snrna (39 kDa, RNA from Saccharomyces cerevisiae)
Lsm3 (8 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (45 kDa, RNA from Saccharomyces cerevisiae)
Lsm4 (8 kDa, Protein from Saccharomyces cerevisiae)
Unknown proteins (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm7 (7 kDa, Protein from Saccharomyces cerevisiae)
Prp31 (47 kDa, Protein from Saccharomyces cerevisiae)
Smg (7 kDa, Protein from Saccharomyces cerevisiae)
Prp3 (37 kDa, Protein from Saccharomyces cerevisiae)
Prp6 (84 kDa, Protein from Saccharomyces cerevisiae)
Dib1 (16 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-8010

Download Map 3D View

Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 3

Release date: March 30, 2016
Resolution: 4.5 Å
EM Method: Single-particle

Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Snu114 (97 kDa, Protein from Saccharomyces cerevisiae)
Smd2 (11 kDa, Protein from Saccharomyces cerevisiae)
Smf (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm8 (7 kDa, Protein from Saccharomyces cerevisiae)
U5 sme (8 kDa, Protein from Saccharomyces cerevisiae)
U5 smd1 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp4 (39 kDa, Protein from Saccharomyces cerevisiae)
Snu13 (13 kDa, Protein from Saccharomyces cerevisiae)
Lsm6 (8 kDa, Protein from Saccharomyces cerevisiae)
Snu66 (24 kDa, Protein from Saccharomyces cerevisiae)
Smb (9 kDa, Protein from Saccharomyces cerevisiae)
Brr2 (202 kDa, Protein from Saccharomyces cerevisiae)
Smd3 (9 kDa, Protein from Saccharomyces cerevisiae)
Prp8 (255 kDa, Protein from Saccharomyces cerevisiae)
Sme (8 kDa, Protein from Saccharomyces cerevisiae)
Tri-snrnp complex with 30 proteins and 3 snrna (1 MDa, Complex from Saccharomyces cerevisiae)
U4 smd1 (10 kDa, Protein from Saccharomyces cerevisiae)
Lsm5 (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm2 (10 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna (25 kDa, RNA from Saccharomyces cerevisiae)
U4 snrna (39 kDa, RNA from Saccharomyces cerevisiae)
Lsm3 (8 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (45 kDa, RNA from Saccharomyces cerevisiae)
Lsm4 (8 kDa, Protein from Saccharomyces cerevisiae)
Unknown proteins (8 kDa, Protein from Saccharomyces cerevisiae)
Lsm7 (7 kDa, Protein from Saccharomyces cerevisiae)
Prp31 (47 kDa, Protein from Saccharomyces cerevisiae)
Smg (7 kDa, Protein from Saccharomyces cerevisiae)
Prp3 (37 kDa, Protein from Saccharomyces cerevisiae)
Prp6 (84 kDa, Protein from Saccharomyces cerevisiae)
Dib1 (16 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-8011

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Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP

Release date: Feb. 3, 2016
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5gam
Q-score: 0.363

Nguyen THD, Galej WP, Bai XC, Oubridge C, Scheres SHW, Newman AJ, Nagai K

Nature (2016) 530 pp. 298-302 [ Pubmed: 26829225 DOI: doi:10.1038/nature16940 ]

Sample:

Small nuclear ribonucleoprotein sm d1 (16 kDa, Protein from Saccharomyces cerevisiae)
Small nuclear ribonucleoprotein-associated protein b (22 kDa, Protein from Saccharomyces cerevisiae)
Foot region of the yeast spliceosomal u4/u6.u5 tri-snrnp (350 kDa, Complex from Saccharomyces cerevisiae)
Unknown polypeptide (1 kDa, Protein from Saccharomyces cerevisiae)
U5 snrna (57 kDa, RNA from Saccharomyces cerevisiae)
Pre-mrna-splicing factor snu114 (114 kDa, Protein from Saccharomyces cerevisiae)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Saccharomyces cerevisiae)
Pre-mrna-splicing factor 8 (85 kDa, Protein from Saccharomyces cerevisiae)
Guanosine-5'-triphosphate (523 Da, Ligand)
Small nuclear ribonucleoprotein sm d3 (11 kDa, Protein from Saccharomyces cerevisiae)
Small nuclear ribonucleoprotein sm d2 (12 kDa, Protein from Saccharomyces cerevisiae)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Saccharomyces cerevisiae)
U6 snrna, 5' end (9 kDa, RNA from Saccharomyces cerevisiae)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

Sort by: Download

Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [6]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: