EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"SmD2" AND release_date:[2025-01-01T00:00:00Z TO 2025-12-31T23:59:59Z]

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Showing 1 - 4 of 4. Page 1 of 1

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EMDB [4]

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EMD-18984

Download Map 3D View

Overall structure of the U11 snRNP

Release date: Feb. 5, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8r7n
Q-score: 0.306

Zhao J, Peter D, Brandina I, Liu X, Galej WP

Mol Cell (2025) 85 pp. 652- [ DOI: doi:10.1016/j.molcel.2024.12.017 Pubmed: 39809272 ]

Sample:

U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
U11/u12 small nuclear ribonucleoprotein 25 kda protein (15 kDa, Protein from Homo sapiens)
Overall structure of the apo-u11 snrnp (300 kDa, Complex from Homo sapiens)
U11/u12 small nuclear ribonucleoprotein 35 kda protein (29 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
U11 snrna (43 kDa, RNA from Homo sapiens)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)

[Show more]

EMD-51223

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Overall structure of the substrate-bound U11 snRNP

Release date: Feb. 5, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9gbw
Q-score: 0.32

Zhao J, Peter D, Brandina I, Liu X, Galej WP

Mol Cell (2025) 85 pp. 652- [ DOI: doi:10.1016/j.molcel.2024.12.017 Pubmed: 39809272 ]

Sample:

U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
Overall structure of the substrate-bound u11 snrnp (400 kDa, Complex from Homo sapiens)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
P120-5'ss (3 kDa, RNA from Homo sapiens)
Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
U11/u12 small nuclear ribonucleoprotein 25 kda protein (15 kDa, Protein from Homo sapiens)
U11/u12 small nuclear ribonucleoprotein 35 kda protein (29 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
U11 snrna (43 kDa, RNA from Homo sapiens)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)

[Show more]

EMD-51226

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3'-lobe of the substrate-bound U11 snRNP

Release date: Feb. 5, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9gc0
Q-score: 0.393

Zhao J, Peter D, Brandina I, Liu X, Galej WP

Mol Cell (2025) 85 pp. 652- [ DOI: doi:10.1016/j.molcel.2024.12.017 Pubmed: 39809272 ]

Sample:

U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
Programmed cell death protein 7 (54 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
3'-lobe of the substrate-bound u11 snrnp (300 kDa, Complex from Homo sapiens)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
U11 snrna (43 kDa, RNA from Homo sapiens)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)

[Show more]

EMD-51233

Download Map 3D View

Structure of the U11 snRNP C-lobe

Release date: Feb. 5, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9gcl
Q-score: 0.413

Zhao J, Peter D, Brandina I, Liu X, Galej WP

Mol Cell (2025) 85 pp. 652- [ DOI: doi:10.1016/j.molcel.2024.12.017 Pubmed: 39809272 ]

Sample:

U11/u12 small nuclear ribonucleoprotein 48 kda protein (40 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
Zinc finger matrin-type protein 5 (20 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)
Structure of the apo-u11 snrnp 3-lobe (300 kDa, Complex from Homo sapiens)
Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
U11 snrna (43 kDa, RNA from Homo sapiens)
Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Filter By

Current Database

Current status

Sample type

Organism

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Author by ORCID

Journal

Software

Microscope

Electron Source

Film or detector model

External links

Field: