PF30S ribosomal subunit - control
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9fo0
Q-score: 0.348
Hassan AH, Pinkas M, Yaeshima C, Ishino S, Uchiumi T, Ito K, Demo G
Nucleic Acids Res (2025) 53 [ Pubmed: 39797736 DOI: doi:10.1093/nar/gkae1324 ]
- Small ribosomal subunit protein us9 (15 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us2 (23 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es17 (7 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us17 (13 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es27 (6 kDa, Protein from Pyrococcus furiosus)
- Pf30s control (850 kDa, Complex from Pyrococcus furiosus)
- Small ribosomal subunit protein es19 (17 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us13 (16 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es28 (8 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us15 (18 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us4 (21 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es4 (28 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es24 (11 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us5 (26 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us19 (15 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es1 (22 kDa, Protein from Pyrococcus furiosus)
- Rna-binding protein (6 kDa, Protein from Pyrococcus furiosus)
- Large ribosomal subunit protein el8 (13 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es6 (14 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Pyrococcus furiosus)
- 16s rrna (485 kDa, RNA from Pyrococcus furiosus)
- Small ribosomal subunit protein es32 (5 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us3 (23 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein us7 (24 kDa, Protein from Pyrococcus furiosus)
- Small ribosomal subunit protein es31 (5 kDa, Protein from Pyrococcus furiosus)
Structure of the 30S-IF3 complex from Escherichia coli
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8jsg
Q-score: 0.265
Proteins (2025) 93 pp. 279-286 [ Pubmed: 38148682 DOI: doi:10.1002/prot.26655 ]
- Small ribosomal subunit protein us7 (16 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us5 (16 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (12 kDa, Protein from Escherichia coli)
- 30s subunit of ribosome (Cellular component)
- Small ribosomal subunit protein us2 (25 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (6 kDa, Protein from Escherichia coli)
- Initiation factor 3 (Cellular component from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Translation initiation factor if-3 (20 kDa, Protein from Escherichia coli)
- Complex of the small ribosomal subunit (30s) and translation initiation factor 3 (if3) in escherichia coli (850 kDa, Complex from Escherichia coli)
- Small ribosomal subunit protein us3 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs6, non-modified isoform (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8bn3
Q-score: 0.597
Rauscher R, Eggers C, Dimitrova-Paternoga L, Shankar V, Rosina A, Cristodero M, Paternoga H, Wilson DN, Leidel SA, Polacek N
Nucleic Acids Res (2024) 52 pp. 4021-4036 [ Pubmed: 38324474 DOI: doi:10.1093/nar/gkae067 ]
- Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein es1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Rps20 isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein es4a (29 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l43-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae)
- Large ribosomal subunit protein el41b (3 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae)
- Eukaryotic translation initiation factor 5a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Dormant yeast 80s ribosome (3 MDa, Complex from Saccharomyces cerevisiae)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- Es17 (13 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein es10a (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s14-b (13 kDa, Protein from Saccharomyces cerevisiae)
- Rps5p (22 kDa, Protein from Saccharomyces cerevisiae)
- Rpl24a isoform 1 (11 kDa, Protein from Saccharomyces cerevisiae)
- Rps26b isoform 1 (11 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae)
- Large ribosomal subunit protein el34a (12 kDa, Protein from Saccharomyces cerevisiae)
- 18s ribosomal rna (559 kDa, RNA from Saccharomyces cerevisiae)
- Small ribosomal subunit protein us4a (21 kDa, Protein from Saccharomyces cerevisiae)
- Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
- Stm1 isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Large ribosomal subunit protein el37a (9 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein us17a (17 kDa, Protein from Saccharomyces cerevisiae)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Rpl11b isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
- Rps2 isoform 1 (23 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae)
- Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Rps15 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein es21a (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s25 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein rack1 (34 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein us2a (27 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein l15 (24 kDa, Protein from Saccharomyces cerevisiae)
- Rpl10 isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l1-a (24 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Small ribosomal subunit protein es6a (25 kDa, Protein from Saccharomyces cerevisiae)
- Rpl9a isoform 1 (21 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8 (21 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l40-a (6 kDa, Protein from Saccharomyces cerevisiae)
- Rps31 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l41-a (2 kDa, Protein from Saccharomyces cerevisiae)
- Large ribosomal subunit protein ul24a (14 kDa, Protein from Saccharomyces cerevisiae)