Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9frk
Q-score: 0.484
Bourgeois G, Coureux PD, Lazennec-Schurdevin C, Madru C, Gaillard T, Duchateau M, Chamot-Rooke J, Bourcier S, Mechulam Y, Schmitt E
Nat Commun (2025) 16 pp. 348-348 [ DOI: doi:10.1038/s41467-024-55718-5 Pubmed: 39753558 ]
- Small ribosomal subunit protein us10 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es28 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Trna met initiator (24 kDa, RNA from Escherichia coli)
- Vapb-type antitoxin (8 kDa, Protein from Saccharolobus solfataricus P2)
- High-resolution cryo-em structure of saccharolobus solfataricus 30s ribosomal subunit bound to mrna and initiator trna (Complex from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es24 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Spermine (202 Da, Ligand)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us17 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna aef1a (9 kDa, RNA from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es1 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es6 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Lsu ribosomal protein s30e (rps30e) (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es19 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us8 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us13 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es17 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Rrna 16s (486 kDa, RNA from Saccharolobus solfataricus P2)
- Large ribosomal subunit protein el8 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es4 (27 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Saccharolobus solfataricus P2)
- As34 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us3 (25 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us4 (20 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us19 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Saccharolobus solfataricus P2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9fs8
Q-score: 0.391
Bourgeois G, Coureux PD, Lazennec-Schurdevin C, Madru C, Gaillard T, Duchateau M, Chamot-Rooke J, Bourcier S, Mechulam Y, Schmitt E
Nat Commun (2025) 16 pp. 348-348 [ DOI: doi:10.1038/s41467-024-55718-5 Pubmed: 39753558 ]
- Small ribosomal subunit protein us10 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es8 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es28 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es24 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Spermine (202 Da, Ligand)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us17 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Trna met initiator (Complex from Escherichia coli)
- As33 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Saccharolobus solfataricus P2)
- Lsu ribosomal protein s26e (rps26e) (10 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us5 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es1 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna ss-aef1a-like (8 kDa, RNA from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es6 (23 kDa, Protein from Saccharolobus solfataricus P2)
- Trna met initiator (24 kDa, RNA from Escherichia coli)
- Cryo-em structure of saccharolobus solfataricus 30s with helix44 inposition down bound to mrna and initiator trna (Complex)
- Saccharolobus solfataricus 30s (Complex from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es31 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Lsu ribosomal protein s30e (rps30e) (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es19 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us8 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es27 (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us13 (18 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es17 (9 kDa, Protein from Saccharolobus solfataricus P2)
- Rrna 16s (486 kDa, RNA from Saccharolobus solfataricus P2)
- Large ribosomal subunit protein el8 (13 kDa, Protein from Saccharolobus solfataricus P2)
- Mrna (Complex from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein es4 (27 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us2 (26 kDa, Protein from Saccharolobus solfataricus P2)
- As34 (8 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us3 (25 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Saccharolobus solfataricus P2)
- Small zinc finger protein hvo-2753-like zinc-binding pocket domain-containing protein (7 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us4 (20 kDa, Protein from Saccharolobus solfataricus P2)
- Small ribosomal subunit protein us19 (16 kDa, Protein from Saccharolobus solfataricus P2)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us12 (16 kDa, Protein from Saccharolobus solfataricus P2)
E. coli 70S-TEC complex in delivery state
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9gr1
Q-score: 0.421
Webster MW, Chauvier A, Rahil H, Graziadei A, Charles K, Miropolskaya N, Takacs M, Saint-Andre C, Rappsilber J, Walter NG, Weixlbaumer A
Science (2024) 386 pp. eado8476-eado8476 [ Pubmed: 39607923 DOI: doi:10.1126/science.ado8476 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BL21(DE3))
- Trna(fmet) p-site (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us2 (26 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BL21(DE3))
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 70s ribosome (Complex from Escherichia coli BL21(DE3))
- Zinc ion (65 Da, Ligand)
- Mrna in ribosome channel (5 kDa, RNA from synthetic construct)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Phenylalanine (165 Da, Ligand)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Phe-nh-trna(phe) a-site (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli BL21(DE3))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli BL21(DE3))
- 16s ribosomal rna (499 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs6, fully modified isoform (15 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BL21(DE3))
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli BL21(DE3))
- Mrna in sd-asd duplex (3 kDa, RNA from synthetic construct)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli BL21(DE3))
- 23s ribosomal rna (948 kDa, RNA from Escherichia coli BL21(DE3))
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli BL21(DE3))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BL21(DE3))
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BL21(DE3))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BL21(DE3))
Structure of a yeast 48S-AUC preinitiation complex in closed conformation
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8rw1
Q-score: 0.404
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Methionine (149 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factors eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Water (18 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ Pubmed: 39193907 DOI: doi:10.1093/nar/gkae737 ]
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ Pubmed: 39193907 DOI: doi:10.1093/nar/gkae737 ]
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit a (110 kDa, Protein from Saccharomyces cerevisiae S288C)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- Water (18 Da, Ligand)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Methionine (149 Da, Ligand)
- Initiation factor eif3 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 3 subunit c (93 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8s8f
Q-score: 0.352
Villamayor-Belinchon L, Sharma P, Gordiyenko Y, Llacer JL, Hussain T
Nucleic Acids Res (2024) 52 pp. 11317-11335 [ DOI: doi:10.1093/nar/gkae737 Pubmed: 39193907 ]
- Eukaryotic translation initiation factor 1a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 2 subunit gamma (57 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s27 (8 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0e23673p (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (Complex from Kluyveromyces lactis)
- Methionine (149 Da, Ligand)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0a10483p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Eukaryotic translation initiation factor 2 subunit alpha (34 kDa, Protein from Saccharomyces cerevisiae S288C)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Ribosome (Complex from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
- 40s ribosomal protein s8 (22 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif1a (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Eukaryotic translation initiation factor 2 subunit beta (31 kDa, Protein from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s26 (13 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s3 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Trna (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0b01474p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0f07843p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b01562p (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es6 (26 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Water (18 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein l41-a (3 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Zinc ion (65 Da, Ligand)
- Klla0b11231p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s4 (29 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Initiation factor eif2 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s30 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us11 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s7 (21 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Mrna (5'-r(p*ap*ap*u)-3') (15 kDa, RNA from Kluyveromyces lactis)
- Met-trnai (24 kDa, RNA from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor eif-1 (12 kDa, Protein from Saccharomyces cerevisiae S288C)
- Initiation factor eif1 (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Klla0e12277p (35 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0b08173p (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s12 (14 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es31 (17 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s25 (12 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Structure of a yeast 48s-auc preinitiation complex in closed conformation (1 MDa, Complex)
- Klla0f18040p (16 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein es1 (28 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 18s ribosomal rna (579 kDa, RNA from Kluyveromyces lactis NRRL Y-1140)
- Klla0a07194p (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- 40s ribosomal protein s24 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Klla0d10659p (25 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us5 (27 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
- Small ribosomal subunit protein us9 (15 kDa, Protein from Kluyveromyces lactis NRRL Y-1140)
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Du Y, Albacete-Albacete L, Ramakrishnan V, Fraser CS
Nat Commun (2024) 15 pp. 6633-6633 [ Pubmed: 39117603 DOI: doi:10.1038/s41467-024-50672-8 ]
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 1 (12 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es25 (13 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es24 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es8 (24 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Programmed cell death protein 4 (52 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es10 (18 kDa, Protein from Homo sapiens)
- Rrna (555 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us7 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us17 (18 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (64 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (166 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit i (36 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (77 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es12 (14 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es17 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- Eukaryotic initiation factor 4a-i (44 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Homo sapiens)
- Pdcd4-40s-eif4a-eif3-eif1 complex (2 MDa, Complex from Homo sapiens)
- Small ribosomal subunit protein es4, x isoform (29 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit g (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- Acetic acid (60 Da, Ligand)
- Small ribosomal subunit protein es30 (6 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (105 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es32 (3 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Homo sapiens)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Homo sapiens)
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9f1b
Q-score: 0.475
Lentzsch AM, Yudin D, Gamerdinger M, Chandrasekar S, Rabl L, Scaiola A, Deuerling E, Ban N, Shan SO
Nature (2024) 633 pp. 718-724 [ DOI: doi:10.1038/s41586-024-07846-7 Pubmed: 39169182 ]
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Human nata (Complex from Homo sapiens)
- Human nate with a gst tag (Complex from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (15 kDa, RNA from Oryctolagus cuniculus)
- Large ribosomal subunit protein el34 (13 kDa, Protein from Oryctolagus cuniculus)
- Glutathione s-transferase class-mu 26 kda isozyme,n-alpha-acetyltransferase 50 (46 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Ternary complex of a translating ribosome, nac and nata/e (3 MDa, Complex)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Spermine (202 Da, Ligand)
- Large ribosomal subunit protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- N-alpha-acetyltransferase 10 (26 kDa, Protein from Homo sapiens)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Human nac heterodimer (Complex from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Rabbit ribosome-nascent chain complex (Complex from Oryctolagus cuniculus)
- Unknown atom or ion (145 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Mrna (543 Da, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- N-alpha-acetyltransferase 15, nata auxiliary subunit (106 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Transcription factor btf3 (17 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
- Human nata/e complex (Complex)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 9f1c
Q-score: 0.371
Lentzsch AM, Yudin D, Gamerdinger M, Chandrasekar S, Rabl L, Scaiola A, Deuerling E, Ban N, Shan SO
Nature (2024) 633 pp. 718-724 [ DOI: doi:10.1038/s41586-024-07846-7 Pubmed: 39169182 ]
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Human nate with a gst tag (Complex from Homo sapiens)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (15 kDa, RNA from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Glutathione s-transferase class-mu 26 kda isozyme,n-alpha-acetyltransferase 50 (46 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- Human nata complex (Complex from Homo sapiens)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el40 (14 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Human methionine aminopeptidase 1 (Complex from Homo sapiens)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Spermine (202 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Large ribosomal subunit protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Quaternary complex of a translating 80s ribosome, nac, metap1 and nata/e (3 MDa, Complex)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Nac heterodimer (Complex from Homo sapiens)
- N-alpha-acetyltransferase 10 (26 kDa, Protein from Homo sapiens)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Unknown atom or ion (Ligand)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- Small ribosomal subunit protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Inositol hexakisphosphate (660 Da, Ligand)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Rabbit ribosome-nascent chain complex (Complex from Oryctolagus cuniculus)
- Nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- Mrna (543 Da, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- N-alpha-acetyltransferase 15, nata auxiliary subunit (106 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Transcription factor btf3 (17 kDa, Protein from Homo sapiens)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Small ribosomal subunit protein rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- Methionine aminopeptidase 1 (43 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
- Human nata/e complex (Complex)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)