Cryo-EM structure of Cas12j-SF05-crRNA-dsDNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8inb
Q-score: 0.489
Duan Z, Zhang X, Zhang JT, Li S, Liu R, Sun J, Zhao Q, Jia N, Jia N, Zhu JK
Cell Discov (2023) 9 pp. 117-117 [ DOI: doi:10.1038/s41421-023-00612-5 Pubmed: 37990011 ]
- Nts-dna (16 kDa, DNA from Biggievirus Mos11)
- Ternary complex of cas12j-sf05 with crrna and target dsdna (Complex from Biggievirus Mos11)
- Crrna (18 kDa, RNA from Biggievirus Mos11)
- Cas12j-sf05 (83 kDa, Protein from Biggievirus Mos11)
- Ts-dna (16 kDa, DNA from Biggievirus Mos11)
CryoEM structure of type IV-A Csf-crRNAsp14-dsDNA ternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xfz
Q-score: 0.547
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ Pubmed: 37343553 DOI: doi:10.1016/j.molcel.2023.05.036 ]
- Crrna (Complex)
- Ts (11 kDa, DNA from Pseudomonas aeruginosa)
- Dsdna (Complex)
- Nts (6 kDa, DNA from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Type iv-a csf (Complex from Pseudomonas aeruginosa)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Type iv-a csf-crrnasp14-dsdna ternary complex (Complex from Pseudomonas aeruginosa)
- Crrna (13 kDa, RNA from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
CryoEM structure of type IV-A Csf-crRNA-dsDNA ternary complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xg0
Q-score: 0.512
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ Pubmed: 37343553 DOI: doi:10.1016/j.molcel.2023.05.036 ]
- Crrna (Complex)
- Nts (16 kDa, DNA from Pseudomonas aeruginosa)
- Dsdna (Complex)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Type iv-a csf (Complex from Pseudomonas aeruginosa)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Type iv-a csf-crrna-dsdna ternary complex (Complex from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
CryoEM structure of type IV-A NTS-nicked dsDNA bound Csf-crRNA ternary complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xg2
Q-score: 0.453
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ Pubmed: 37343553 DOI: doi:10.1016/j.molcel.2023.05.036 ]
- Crrna (Complex)
- Dsdna (Complex)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Type iv-a nts-nicked dsdna bound csf-crrna ternary complex (Complex from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Nts (13 kDa, DNA from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)
CryoEM structure of type IV-A CasDinG bound NTS-nicked Csf-crRNA-dsDNA quaternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xg3
Q-score: 0.371
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ Pubmed: 37343553 DOI: doi:10.1016/j.molcel.2023.05.036 ]
- Type iv-a casding bound nts-nicked csf-crrna-dsdna quaternary complex (Complex from Pseudomonas aeruginosa)
- Crrna (Complex)
- Nts (9 kDa, DNA from Pseudomonas aeruginosa)
- Dsdna (Complex)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf4 (67 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7xg4
Q-score: 0.285
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ Pubmed: 37343553 DOI: doi:10.1016/j.molcel.2023.05.036 ]
- Type iv-a casding bound nts-nicked csf-crrna-dsdna quaternary complex in a second state (Complex from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf4 (67 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Nts (11 kDa, DNA from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)