CryoEM structure of isNS1 in complex with Fab56.2 and HDL
Chew BLA, Ngoh ANQ, Phoo WW, Chan KWK, Ser Z, Tulsian NK, Lim SS, Weng MJG, Watanabe S, Choy MM, Low J, Ooi EE, Ruedl C, Sobota RM, Vasudevan SG, Luo D
eLife (2024) 12 [ Pubmed: 38787378 DOI: doi:10.7554/eLife.90762 ]
- Isns1ts (Complex from Dengue virus type 2)
- Monoclonal antibody fragment 56.2 (Complex from Mus musculus)
- Fab 56.2 light chain (Macromolecule from Mus musculus)
- Core protein (Macromolecule from Dengue virus type 2)
- Fab 56.2 heavy chain (Macromolecule from Mus musculus)
- Ternary complex of fab56.2 with dengue virus nonstructural protein 1 and high density lipoprotein (Complex)
CryoEM structure of isNS1 in complex with Fab56.2
Chew BLA, Ngoh ANQ, Phoo WW, Chan KWK, Ser Z, Tulsian NK, Lim SS, Weng MJG, Watanabe S, Choy MM, Low J, Ooi EE, Ruedl C, Sobota RM, Vasudevan SG, Luo D
eLife (2024) 12 [ Pubmed: 38787378 DOI: doi:10.7554/eLife.90762 ]
- Isns1ts (Complex from Dengue virus type 2)
- Ternary complex of fab56.2 with dengue virus nonstructural protein 1 and high density lipoprotein (Complex)
- Core protein (Macromolecule from dengue virus type 2)
- Fab56.2 light chain (Macromolecule from Mus musculus)
- Fab56.2 (Complex from Mus musculus)
- Fab56.2 heavy chain (Macromolecule from Mus musculus)
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7sq1
Q-score: 0.406
Xu Z, Walker S, Wise MC, Chokkalingam N, Purwar M, Moore A, Tello-Ruiz E, Wu Y, Majumdar S, Konrath KM, Kulkarni A, Tursi NJ, Zaidi FI, Reuschel EL, Patel I, Obeirne A, Du J, Schultheis K, Gites L, Smith T, Mendoza J, Broderick KE, Humeau L, Pallesen J, Weiner DB, Kulp DW
Nat Commun (2022) 13 pp. 695-695 [ DOI: doi:10.1038/s41467-022-28363-z Pubmed: 35121758 ]
- C05 fab light chain (12 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- C05 fab heavy chain (13 kDa, Protein from Mus musculus)
- Bg505.md39ts env trimer in complex with fab from antibody c05 (410 kDa, Complex)
- Envelope glycoprotein gp160 (52 kDa, Protein from Human immunodeficiency virus 1)
Tomogram of a mouse dorsal root ganglion axon (dataset 2, TS_43).
Foster HE, Ventura Santos C, Carter AP
J Cell Biol (2022) 221 [ Pubmed: 34878519 DOI: doi:10.1083/jcb.202103154 ]
Tomogram of mouse dorsal root ganglion axon (dataset 2, TS_41).
Foster HE, Ventura Santos C, Carter AP
J Cell Biol (2022) 221 [ Pubmed: 34878519 DOI: doi:10.1083/jcb.202103154 ]
Tomogram of mouse dorsal root ganglion axon (dataset 1, TS_14).
Foster HE, Ventura Santos C, Carter AP
J Cell Biol (2022) 221 [ Pubmed: 34878519 DOI: doi:10.1083/jcb.202103154 ]
Tomogram of mouse dorsal root ganglion axon (dataset 1, TS_20).
Foster HE, Ventura Santos C, Carter AP
J Cell Biol (2022) 221 [ Pubmed: 34878519 DOI: doi:10.1083/jcb.202103154 ]
Tomogram of mouse dorsal root ganglion axon (dataset 1, TS_29).
Foster HE, Ventura Santos C, Carter AP
J Cell Biol (2022) 221 [ Pubmed: 34878519 DOI: doi:10.1083/jcb.202103154 ]
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7opc
Q-score: 0.472
Kokic G, Wagner FR, Chernev A, Urlaub H, Cramer P
Nature (2021) 598 pp. 368-372 [ DOI: doi:10.1038/s41586-021-03906-4 Pubmed: 34526721 ]
- Cullin-4a (88 kDa, Protein from Homo sapiens)
- Supplementary proteins (Complex from Homo sapiens)
- Nts (14 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Ts (14 kDa, DNA from Homo sapiens)
- Rna (14 kDa, RNA from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase with rna_pol_l_2 and rna polymerase (Complex from Sus scrofa)
- Transcription elongation factor spt6 (199 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb1 (217 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Nts, rna, ts (Complex from Homo sapiens)
- Rna polymerase ii-associated factor 1 homolog (60 kDa, Protein from Homo sapiens)
- Transcribing pol ii bound to csb, crl4csa, uvssa, paf and spt6. (Complex)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Dna excision repair protein ercc-6 (168 kDa, Protein from Homo sapiens)
- Parafibromin (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- E3 ubiquitin-protein ligase rbx1 (Complex from Mus musculus)
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Sus scrofa)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Mus musculus)
- Rna polymerase-associated protein leo1 (75 kDa, Protein from Homo sapiens)
- Dna excision repair protein ercc-8 (44 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Uv-stimulated scaffold protein a (80 kDa, Protein from Homo sapiens)
- Leo1 helix (3 kDa, Protein from Homo sapiens)
- Rpol4c domain-containing protein (16 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein ctr9 homolog (134 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Wd repeat-containing protein 61 (33 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7opd
Q-score: 0.472
Kokic G, Wagner FR, Chernev A, Urlaub H, Cramer P
Nature (2021) 598 pp. 368-372 [ Pubmed: 34526721 DOI: doi:10.1038/s41586-021-03906-4 ]
- E3 ubiquitin-protein ligase rbx1 (Complex from Mus musculus)
- Dna-directed rna polymerase with rna_pol_l_2 and rna polymerase (Complex from Sus scrofa)
- Nts, rna, ts (Complex from Homo sapiens)
- Parafibromin (60 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb1 (217 kDa, Protein from Sus scrofa)
- Uv-stimulated scaffold protein a (80 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ts (14 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Dna excision repair protein ercc-6 (168 kDa, Protein from Homo sapiens)
- Nts (14 kDa, DNA from Homo sapiens)
- Dna excision repair protein ercc-8 (44 kDa, Protein from Homo sapiens)
- E3 ubiquitin-protein ligase rbx1 (12 kDa, Protein from Mus musculus)
- Transcription elongation factor spt6 (199 kDa, Protein from Homo sapiens)
- Rna (14 kDa, RNA from Homo sapiens)
- Rna_pol_l_2 domain-containing protein (13 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein ctr9 homolog (134 kDa, Protein from Homo sapiens)
- Cullin-4a (88 kDa, Protein from Homo sapiens)
- Leo1 helix (3 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein leo1 (75 kDa, Protein from Homo sapiens)
- Rna polymerase ii-associated factor 1 homolog (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Supplementary proteins (Complex from Homo sapiens)
- Transcribing pol ii bound to trc factors, spt6 and paf. (Complex)
- Wd repeat-containing protein 61 (33 kDa, Protein from Homo sapiens)
- Rpol4c domain-containing protein (16 kDa, Protein from Sus scrofa)