DNA bound type IV-A3 CRISPR effector complex from K. pneumoniae
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8rc2
Q-score: 0.518
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Zinc ion (65 Da, Ligand)
- Crispr type aferr-associated protein csf2 (38 kDa, Protein from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf3 (25 kDa, Protein from Klebsiella pneumoniae)
- Crrna (19 kDa, RNA from Klebsiella pneumoniae)
- Type iv-a3 crispr-cas effector complex from klebsiella pneumoniae bound to crrna and target dna (332 kDa, Complex from Klebsiella pneumoniae)
- Target strand (ts)-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Non-target strand (nts)-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf1 (29 kDa, Protein from Klebsiella pneumoniae)
DNA bound type IV-A1 CRISPR effector complex from P. oleovorans
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8rc3
Q-score: 0.522
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Type iv-a1 crispr-cas effector complex from pseudomonas oleovorans bound to crrna (Complex from Pseudomonas oleovorans)
- Zinc ion (65 Da, Ligand)
- Non-target strand (nts) dna (18 kDa, DNA from Pseudomonas oleovorans)
- Target strand (ts) dna (18 kDa, DNA from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf1 (27 kDa, Protein from Pseudomonas oleovorans)
- Crrna (19 kDa, RNA from Pseudomonas oleovorans)
- Target dna (Complex from Pseudomonas oleovorans)
- Type iv-a1 crispr-cas effector complex from pseudomonas oleovorans bound to crrna and target dna (332 kDa, Complex)
- Crispr type aferr-associated protein csf3 (24 kDa, Protein from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf2 (37 kDa, Protein from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf5 (25 kDa, Protein from Pseudomonas oleovorans)
DNA bound type IV-A1 CRISPR effector complex with the DinG helicase from P. oleovorans
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8rfj
Q-score: 0.402
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Target strand (ts-)dna (18 kDa, DNA from Pseudomonas oleovorans)
- Zinc ion (65 Da, Ligand)
- Type iv-a1 crispr-cas effector complex with the ding helicase from pseudomonas oleovorans bound to crrna (Complex from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf1 (27 kDa, Protein from Pseudomonas oleovorans)
- Crrna (19 kDa, RNA from Pseudomonas oleovorans)
- Target dna (Complex from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf3 (24 kDa, Protein from Pseudomonas oleovorans)
- Atp-dependent dna helicase ding (77 kDa, Protein from Pseudomonas oleovorans)
- Crispr type aferr-associated protein csf2 (37 kDa, Protein from Pseudomonas oleovorans)
- Non-target strand (nts-) dna (18 kDa, DNA from Pseudomonas oleovorans)
- Type iv-a1 crispr-cas effector complex with the ding helicase from pseudomonas oleovorans bound to crrna and target dna (332 kDa, Complex)
- Crispr type aferr-associated protein csf5 (25 kDa, Protein from Pseudomonas oleovorans)
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state I)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8s35
Q-score: 0.381
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Zinc ion (65 Da, Ligand)
- Crispr type aferr-associated protein csf2 (38 kDa, Protein from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf3 (25 kDa, Protein from Klebsiella pneumoniae)
- Crrna (19 kDa, RNA from Klebsiella pneumoniae)
- Type iv-a3 crispr-cas effector complex with ding from klebsiella pneumoniae bound to crrna and target dna (428 kDa, Complex)
- Ts-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Dead/deah box helicase (70 kDa, Protein from Klebsiella pneumoniae)
- Crispr effector in complex with a ding helicase and crrna (Complex from Klebsiella pneumoniae)
- Nts-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf1 (29 kDa, Protein from Klebsiella pneumoniae)
- Double-stranded dna (Complex from Klebsiella pneumoniae)
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state II)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8s36
Q-score: 0.388
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Zinc ion (65 Da, Ligand)
- Crispr type aferr-associated protein csf2 (38 kDa, Protein from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf3 (25 kDa, Protein from Klebsiella pneumoniae)
- Crrna (19 kDa, RNA from Klebsiella pneumoniae)
- Type iv-a3 crispr-cas effector complex with ding from klebsiella pneumoniae bound to crrna and target dna (Complex)
- Ts-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Nts-nda (18 kDa, DNA from Klebsiella pneumoniae)
- Dead/deah box helicase (70 kDa, Protein from Klebsiella pneumoniae)
- Crispr effector in complex with a ding helicase and crrna (Complex from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf1 (29 kDa, Protein from Klebsiella pneumoniae)
- Double-stranded dna (Complex from Klebsiella pneumoniae)
DNA-bound Type IV-A3 CRISPR effector in complex with DinG helicase from K. pneumoniae (state III)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8s37
Q-score: 0.371
Cepaite R, Klein N, Miksys A, Camara-Wilpert S, Ragozius V, Benz F, Skorupskaite A, Becker H, Zvejyte G, Steube N, Hochberg GKA, Randau L, Pinilla-Redondo R, Malinauskaite L, Pausch P
Nat Commun (2024) 15 pp. 9306-9306 [ Pubmed: 39468082 DOI: doi:10.1038/s41467-024-53778-1 ]
- Zinc ion (65 Da, Ligand)
- Crispr type aferr-associated protein csf2 (38 kDa, Protein from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf3 (25 kDa, Protein from Klebsiella pneumoniae)
- Crrna (19 kDa, RNA from Klebsiella pneumoniae)
- Type iv-a3 crispr-cas effector complex with ding from klebsiella pneumoniae bound to crrna and target dna (Complex)
- Ts-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Dead/deah box helicase (70 kDa, Protein from Klebsiella pneumoniae)
- Crispr effector in complex with a ding helicase and crrna (Complex from Klebsiella pneumoniae)
- Nts-dna (18 kDa, DNA from Klebsiella pneumoniae)
- Crispr type aferr-associated protein csf1 (29 kDa, Protein from Klebsiella pneumoniae)
- Double-stranded dna (Complex from Klebsiella pneumoniae)
Type I-FHNH Cascade-dsDNA intermediate complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ydb
Q-score: 0.443
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Cas8f fusion with hnh (39 kDa, Protein from Selenomonas sp.)
- Type i-fhnh cascade-dsdna intermediate complex (Complex from Selenomonas sp.)
- Cas5f (28 kDa, Protein from Selenomonas sp.)
- Nts (3 kDa, Macromolecule from Selenomonas sp.)
- Cas6f (20 kDa, Protein from Selenomonas sp.)
- Ts (10 kDa, Macromolecule from Selenomonas sp.)
- Cas7f (38 kDa, Protein from Selenomonas sp.)
- 60-nt crrna (19 kDa, RNA from Selenomonas sp.)
Type I-FHNH Cascade-dsDNA R-loop complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8yeo
Q-score: 0.432
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Cas8f fusion with hnh (39 kDa, Protein from Selenomonas sp.)
- Cas5f (28 kDa, Protein from Selenomonas sp.)
- Nts (3 kDa, Macromolecule from Selenomonas sp.)
- Cas6f (20 kDa, Protein from Selenomonas sp.)
- Type i-fhnh cascade-dsdna r-loop complex (Complex from Selenomonas sp.)
- Cas7f (38 kDa, Protein from Selenomonas sp.)
- 60-nt crrna (19 kDa, RNA from Selenomonas sp.)
- Ts (15 kDa, Macromolecule from Selenomonas sp.)
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8t79
Q-score: 0.383
Hibshman GN, Bravo JPK, Hooper MM, Dangerfield TL, Zhang H, Finkelstein IJ, Johnson KA, Taylor DW
Nat Commun (2024) 15 pp. 3663-3663 [ DOI: doi:10.1038/s41467-024-47830-3 Pubmed: 38688943 ]
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes)
- Ternary complex of spry-cas9 with grna and non-target dna with 10 bp r-loop (211 kDa, Complex from Streptococcus pyogenes)
- Grna (28 kDa, RNA from Streptococcus pyogenes)
- Ts (6 kDa, DNA from Escherichia phage Lambda)
- Nts (2 kDa, DNA from Escherichia phage Lambda)
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8spq
Q-score: 0.431
Hibshman GN, Bravo JPK, Hooper MM, Dangerfield TL, Zhang H, Finkelstein IJ, Johnson KA, Taylor DW
Nat Commun (2024) 15 pp. 3663-3663 [ DOI: doi:10.1038/s41467-024-47830-3 Pubmed: 38688943 ]
- Ts (16 kDa, DNA from Escherichia phage Lambda)
- Nts (5 kDa, DNA from Escherichia phage Lambda)
- Ternary complex of spry-cas9 with lambda 1 grna and lambda 1 dna (211 kDa, Complex from Streptococcus pyogenes)
- Ts (5 kDa, DNA from Escherichia phage Lambda)
- Crispr-associated endonuclease cas9/csn1 (159 kDa, Protein from Streptococcus pyogenes serotype M1)
- Magnesium ion (24 Da, Ligand)
- Grna (31 kDa, RNA from Streptococcus pyogenes)