Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8iyq
Q-score: 0.513
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Structure of cbcas9 bound to 20-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wmh
Q-score: 0.279
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Ts (8 kDa, DNA from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Structure of cbcas9 bound to 6-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8wmm
Q-score: 0.342
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary) (469 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of Cas12j-SF05-crRNA-dsDNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8inb
Q-score: 0.489
Duan Z, Zhang X, Zhang JT, Li S, Liu R, Sun J, Zhao Q, Jia N, Jia N, Zhu JK
Cell Discov (2023) 9 pp. 117-117 [ DOI: doi:10.1038/s41421-023-00612-5 Pubmed: 37990011 ]
- Nts-dna (16 kDa, DNA from Biggievirus Mos11)
- Ternary complex of cas12j-sf05 with crrna and target dsdna (Complex from Biggievirus Mos11)
- Crrna (18 kDa, RNA from Biggievirus Mos11)
- Ts-dna (16 kDa, DNA from Biggievirus Mos11)
- Cas12j-sf05 (83 kDa, Protein from Biggievirus Mos11)
CryoEM structure of type IV-A Csf-crRNAsp14-dsDNA ternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xfz
Q-score: 0.547
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ DOI: doi:10.1016/j.molcel.2023.05.036 Pubmed: 37343553 ]
- Crrna (13 kDa, RNA from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Nts (6 kDa, DNA from Pseudomonas aeruginosa)
- Type iv-a csf (Complex from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Ts (11 kDa, DNA from Pseudomonas aeruginosa)
- Type iv-a csf-crrnasp14-dsdna ternary complex (Complex from Pseudomonas aeruginosa)
CryoEM structure of type IV-A Csf-crRNA-dsDNA ternary complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7xg0
Q-score: 0.512
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ DOI: doi:10.1016/j.molcel.2023.05.036 Pubmed: 37343553 ]
- Zinc ion (65 Da, Ligand)
- Type iv-a csf (Complex from Pseudomonas aeruginosa)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Nts (16 kDa, DNA from Pseudomonas aeruginosa)
- Type iv-a csf-crrna-dsdna ternary complex (Complex from Pseudomonas aeruginosa)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
CryoEM structure of type IV-A NTS-nicked dsDNA bound Csf-crRNA ternary complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xg2
Q-score: 0.453
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ DOI: doi:10.1016/j.molcel.2023.05.036 Pubmed: 37343553 ]
- Zinc ion (65 Da, Ligand)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Type iv-a nts-nicked dsdna bound csf-crrna ternary complex (Complex from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Nts (13 kDa, DNA from Pseudomonas aeruginosa)
CryoEM structure of type IV-A CasDinG bound NTS-nicked Csf-crRNA-dsDNA quaternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xg3
Q-score: 0.371
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ DOI: doi:10.1016/j.molcel.2023.05.036 Pubmed: 37343553 ]
- Nts (9 kDa, DNA from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csf4 (67 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Type iv-a casding bound nts-nicked csf-crrna-dsdna quaternary complex (Complex from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7xg4
Q-score: 0.285
Cui N, Zhang JT, Liu Y, Liu Y, Liu XY, Wang C, Huang H, Jia N
Mol Cell (2023) 83 pp. 2493-2508.e5 [ DOI: doi:10.1016/j.molcel.2023.05.036 Pubmed: 37343553 ]
- Type iv-a casding bound nts-nicked csf-crrna-dsdna quaternary complex in a second state (Complex from Pseudomonas aeruginosa)
- Zinc ion (65 Da, Ligand)
- Csf3 (24 kDa, Protein from Pseudomonas aeruginosa)
- Csf4 (67 kDa, Protein from Pseudomonas aeruginosa)
- Crrna (Complex)
- Dsdna (Complex)
- Csf2 (37 kDa, Protein from Pseudomonas aeruginosa)
- Csf5 (29 kDa, Protein from Pseudomonas aeruginosa)
- Csf (Complex from Pseudomonas aeruginosa)
- Ts (16 kDa, DNA from Pseudomonas aeruginosa)
- Crrna (19 kDa, RNA from Pseudomonas aeruginosa)
- Csf1 (28 kDa, Protein from Pseudomonas aeruginosa)
- Nts (11 kDa, DNA from Pseudomonas aeruginosa)
PlmCasX-sgRNAv1-dsDNA ternary complex at ts loading state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7waz
Q-score: 0.246
Tsuchida CA, Zhang S, Doost MS, Zhao Y, Wang J, O'Brien E, Fang H, Li CP, Li D, Hai ZY, Chuck J, Brotzmann J, Vartoumian A, Burstein D, Chen XW, Nogales E, Doudna JA, Liu JG
Mol Cell (2022) 82 pp. 1199-1209.e6 [ DOI: doi:10.1016/j.molcel.2022.02.002 Pubmed: 35219382 ]
- Nts-dna (12 kDa, DNA from Planctomycetes bacterium)
- Rna (Complex)
- Dna (Complex from Planctomycetes bacterium)
- Ts-dna (12 kDa, DNA from Planctomycetes bacterium)
- Dplmcasx (112 kDa, Protein from Planctomycetes bacterium)
- Plmcasx-sgrnav1-dsdna ternary complex at nts loading state (Complex from Planctomycetes bacterium)
- Plmcasx (Complex from Planctomycetes bacterium)
- Rna (115-mer) (39 kDa, RNA from Planctomycetes bacterium)