Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8iyq
Q-score: 0.513
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Structure of cbcas9 bound to 20-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wmh
Q-score: 0.279
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Ts (8 kDa, DNA from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Structure of cbcas9 bound to 6-nucleotide complementary dna substrate (228 kDa, Complex from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8wmm
Q-score: 0.342
Zhang S, Sun A, Qian JM, Lin S, Xing W, Yang Y, Zhu HZ, Zhou XY, Guo YS, Liu Y, Meng Y, Jin SL, Song W, Li CP, Li Z, Jin S, Wang JH, Dong MQ, Gao C, Chen C, Bai Y, Liu JG
Nature (2024) 630 pp. 484-492 [ DOI: doi:10.1038/s41586-024-07486-x Pubmed: 38811729 ]
- Pcriic1 (15 kDa, Protein from Chryseobacterium)
- Sgrna (40 kDa, RNA from Chryseobacterium)
- Ts (8 kDa, DNA from Chryseobacterium)
- Structure of cbcas9-pcriic1 complex bound to 28-bp dna substrate (20-nt complementary) (469 kDa, Complex from Chryseobacterium)
- Deadcbcas9 (170 kDa, Protein from Chryseobacterium)
- Nts (8 kDa, DNA from Chryseobacterium)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of Cas12j-SF05-crRNA-dsDNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8inb
Q-score: 0.489
Duan Z, Zhang X, Zhang JT, Li S, Liu R, Sun J, Zhao Q, Jia N, Jia N, Zhu JK
Cell Discov (2023) 9 pp. 117-117 [ DOI: doi:10.1038/s41421-023-00612-5 Pubmed: 37990011 ]
- Nts-dna (16 kDa, DNA from Biggievirus Mos11)
- Ternary complex of cas12j-sf05 with crrna and target dsdna (Complex from Biggievirus Mos11)
- Crrna (18 kDa, RNA from Biggievirus Mos11)
- Ts-dna (16 kDa, DNA from Biggievirus Mos11)
- Cas12j-sf05 (83 kDa, Protein from Biggievirus Mos11)
Cryo-EM structure of SaCas9-sgRNA-DNA ternary complex
Du W, Zhu H, Qian J, Xue D, Zheng S, Huang Q
Int J Mol Sci (2023) 24 [ DOI: doi:10.3390/ijms24021204 Pubmed: 36674715 ]
- Single-guide rna (sgrna) (RNA from synthetic construct)
- Sacas9 (Complex)
- Target dna strand(ts) (DNA from synthetic construct)
- Non-target dna strand (nts) (DNA from synthetic construct)
- Sacas9 (Protein from Staphylococcus aureus)
- Sacas9-sgrna-target dna ternary complex (Complex from Staphylococcus aureus)
- Sgrna-target dna (Complex)