Baseplate structure of Escherichia phage Mu
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ki1
Q-score: 0.517
To Be Published
- Tail fiber protein s (55 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp47 (38 kDa, Protein from Escherichia phage Mu)
- Baseplate hub protein gp44 (41 kDa, Protein from Escherichia phage Mu)
- Escherichia phage mu (Virus from Escherichia phage Mu)
- Calcium ion (40 Da, Ligand)
- Tail sheath protein (53 kDa, Protein from Escherichia phage Mu)
- Tail tube protein (12 kDa, Protein from Escherichia phage Mu)
- Baseplate puncturing device gp45 (21 kDa, Protein from Escherichia phage Mu)
- Probable tape measure protein (73 kDa, Protein from Escherichia phage Mu)
- Baseplate protein gp46 (16 kDa, Protein from Escherichia phage Mu)
- Fe (iii) ion (55 Da, Ligand)
- Baseplate protein gp48 (20 kDa, Protein from Escherichia phage Mu)
- Dna circularization protein n (52 kDa, Protein from Escherichia phage Mu)
Pseudomonas phage Pa193 baseplate complex and tail fiber
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9b45
Q-score: 0.443
Iglesias SM, Hou CD, Reid J, Schauer E, Geier R, Soriaga A, Sim L, Gao L, Whitelegge J, Kyme P, Birx D, Lemire S, Cingolani G
Commun Biol (2024) 7 pp. 1275-1275 [ Pubmed: 39370451 DOI: doi:10.1038/s42003-024-06985-x ]
- Gp47 tail fiber (103 kDa, Protein from Pseudomonas virus Pa193)
- Gp46 baseplate wedge 2 (54 kDa, Protein from Pseudomonas virus Pa193)
- Gp35 sheath initiator (12 kDa, Protein from Pseudomonas virus Pa193)
- Gp42 tail hub (32 kDa, Protein from Pseudomonas virus Pa193)
- Gp41 tape measure protein (94 kDa, Protein from Pseudomonas virus Pa193)
- Gp38 ripcord-1 (20 kDa, Protein from Pseudomonas virus Pa193)
- Pseudomonas virus pa193 (Virus from Pseudomonas virus Pa193)
- Gp45-a baseplate wedge 1 (43 kDa, Protein from Pseudomonas virus Pa193)
- Gp44 tail tip (24 kDa, Protein from Pseudomonas virus Pa193)
- Gp34 helical bundle (12 kDa, Protein from Pseudomonas virus Pa193)
- Gp37 baseplate tube (17 kDa, Protein from Pseudomonas virus Pa193)
- Gp39 ripcord-2 (21 kDa, Protein from Pseudomonas virus Pa193)
Tail channel of phage 812 virion (C1)
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Plevka P
To Be Published
Tail channel of phage 812 virion (C3)
Cienikova Z, Novacek J, Siborova M, Popelarova B, Fuzik T, Benesik M, Bardy P, Plevka P
To Be Published
CryoEM Structure of Diffocin - precontracted - Baseplate - focused refinement on triplex region
Cai X, He Y, Yu I, Imani A, Scholl D, Miller JF, Zhou ZH
Nat Commun (2024) 15 pp. 7057-7057 [ DOI: doi:10.1038/s41467-024-51038-w Pubmed: 39152109 ]
- Tube (cd1364) (16 kDa, Protein from Clostridioides difficile)
- Sheath initiator (cd1370) (16 kDa, Protein from Clostridioides difficile)
- Hub-hydrolase (cd1368) (65 kDa, Protein from Clostridioides difficile)
- Tri-1 (cd1372) (26 kDa, Protein from Clostridioides difficile)
- Tape measure protein (cd1366) (89 kDa, Protein from Clostridioides difficile)
- Spike (cd1369) (12 kDa, Protein from Clostridioides difficile)
- Tube tail (cd1367) (16 kDa, Protein from Clostridioides difficile)
- Diffocin (Complex from Clostridioides difficile)
- Tri-2 (cd1371) (39 kDa, Protein from Clostridioides difficile)
- Sheath (cd1363) (39 kDa, Protein from Clostridioides difficile)
Bacteriophage JBD30 baseplate - composite structure
Valentova L, Fuzik T, Novacek J, Hlavenkova Z, Pospisil J, Plevka P
EMBO J (2024) 43 pp. 4384-4405 [ Pubmed: 39143239 DOI: doi:10.1038/s44318-024-00195-1 ]
- Tip attachment protein j domain-containing protein (79 kDa, Protein from Pseudomonas phage JBD30)
- Virion structural protein (33 kDa, Protein from Pseudomonas phage JBD30)
- Pseudomonas phage jbd30 (1 MDa, Virus from Pseudomonas phage JBD30)
- Virion structural protein (62 kDa, Protein from Pseudomonas phage JBD30)
- Duf2793 domain-containing protein (40 kDa, Protein from Pseudomonas phage JBD30)
- Tape measure protein n-terminal domain-containing protein (120 kDa, Protein from Pseudomonas phage JBD30)
- Virion structural protein (26 kDa, Protein from Pseudomonas phage JBD30)
- Duf2163 domain-containing protein (29 kDa, Protein from Pseudomonas phage JBD30)
- Virion structural protein (35 kDa, Protein from Pseudomonas phage JBD30)
Neck of DT57C bacteriophage in the full state
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hqo
Q-score: 0.441
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- Tape measure protein (132 kDa, Protein from Escherichia phage DT57C)
- Tail terminator protein (18 kDa, Protein from Escherichia phage DT57C)
- Tequintavirus dt57c (Virus from Tequintavirus DT57C)
- Portal protein (45 kDa, Protein from Escherichia phage DT57C)
- Head completion protein (19 kDa, Protein from Escherichia phage DT57C)
Baseplate of DT57C bacteriophage in the full state
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8hqz
Q-score: 0.446
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
- L-shaped tail fiber assembly (113 kDa, Protein from Escherichia phage DT57C)
- Tape measure protein (132 kDa, Protein from Escherichia phage DT57C)
- Minor tail protein (34 kDa, Protein from Escherichia phage DT57C)
- Baseplate hub protein (107 kDa, Protein from Escherichia phage DT57C)
- L-shaped tail fiber assembly (15 kDa, Protein from Escherichia phage DT57C)
- Tail tube protein (50 kDa, Protein from Escherichia phage DT57C)
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Distal tail protein (22 kDa, Protein from Escherichia phage DT57C)
Curved tail segment of the DT57C bacteriophage in the full state
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ DOI: doi:10.1038/s41467-023-43824-9 Pubmed: 38081816 ]
Structure of the bacteriophage lambda tail tip complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8k35
Q-score: 0.539
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Tail tip protein m (12 kDa, Protein from Escherichia phage Lambda)
- Tape measure protein (92 kDa, Protein from Escherichia phage Lambda)
- Tail tip protein l (25 kDa, Protein from Escherichia phage Lambda)
- Tip attachment protein j (124 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Iron/sulfur cluster (351 Da, Ligand)
- Tail tip assembly protein i (23 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)