Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7wwv
Q-score: 0.484
Zhang M, Peng R, Peng Q, Liu S, Li Z, Zhang Y, Song H, Yang J, Xing X, Wang P, Qi J, Gao GF
PNAS (2023) 120 pp. e2215098120-e2215098120 [ Pubmed: 37094126 DOI: doi:10.1073/pnas.2215098120 ]
- Guide-rna (19 kDa, RNA from Vibrio phage ICP1 2011 A)
- Non-target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
- Csy2 (29 kDa, Protein from Vibrio phage ICP1 2011 A)
- Target dna bound icp1 csy complex (Complex from Vibrio phage ICP1 2011 A)
- Csy3 (35 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy1 (22 kDa, Protein from Vibrio phage ICP1 2011 A)
- Target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
Cascade complex from type I-A CRISPR-Cas system
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7tr9
Q-score: 0.225
Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A
Mol Cell (2022) 82 pp. 2754-2768.e5 [ Pubmed: 35835111 DOI: doi:10.1016/j.molcel.2022.06.007 ]
- Nickel (ii) ion (58 Da, Ligand)
- Cas5a (29 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Target strand dna (6 kDa, DNA from Escherichia coli)
- Non-target strand dna (2 kDa, DNA from Escherichia coli)
- Cas11a (12 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crispr-associated helicase cas3 (61 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crrna (45-mer) (14 kDa, RNA from Escherichia coli)
- Crispr-associated endonuclease cas3-hd (26 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas8a (38 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas7a (36 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Partial r-loop state of cas3-cascade complex from pyrococcus furiosus type i-a crispr/cas system (450 kDa, Complex from Geobacter sulfurreducens)
Cascade complex from type I-A CRISPR-Cas system
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7tra
Q-score: 0.324
Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A
Mol Cell (2022) 82 pp. 2754-2768.e5 [ Pubmed: 35835111 DOI: doi:10.1016/j.molcel.2022.06.007 ]
- Full r-loop state of cas3-cascade complex from pyrococcus furiosus type i-a crispr/cas system (450 kDa, Complex from Geobacter sulfurreducens)
- Nickel (ii) ion (58 Da, Ligand)
- Cas5a (29 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas11a (12 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crispr-associated helicase cas3 (61 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crrna (44-mer) (14 kDa, RNA from Escherichia coli)
- Cas8a (38 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crispr-associated endonuclease cas3-hd (24 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas7a (36 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Non-target strand dna (25-mer) (7 kDa, DNA from Escherichia coli)
- Target strand dna (44-mer) (13 kDa, DNA from Escherichia coli)
Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6o0x
Q-score: 0.479
Zhu X, Clarke R, Puppala AK, Chittori S, Merk A, Merrill BJ, Simonovic M, Subramaniam S
Nat Struct Mol Biol (2019) 26 pp. 679-685 [ DOI: doi:10.1038/s41594-019-0258-2 Pubmed: 31285607 ]
- 5' product of target strand dna (3 kDa, DNA from synthetic construct)
- 3' product of target strand dna (8 kDa, DNA from synthetic construct)
- Single guide rna (33 kDa, RNA from synthetic construct)
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes)
- Non-target strand dna (12 kDa, DNA from synthetic construct)
- Cas9-sgrna-dna ternary complex (Complex from Streptococcus pyogenes)
Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6o0y
Q-score: 0.479
Zhu X, Clarke R, Puppala AK, Chittori S, Merk A, Merrill BJ, Simonovic M, Subramaniam S
Nat Struct Mol Biol (2019) 26 pp. 679-685 [ DOI: doi:10.1038/s41594-019-0258-2 Pubmed: 31285607 ]
- 5' product of target strand dna (3 kDa, DNA from synthetic construct)
- 3' product of target strand dna (8 kDa, DNA from synthetic construct)
- Single guide rna (33 kDa, RNA from synthetic construct)
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes)
- Non-target strand dna (12 kDa, DNA from synthetic construct)
- Cas9-sgrna-dna ternary complex (Complex from Streptococcus pyogenes)
Conformational states of Cas9-sgRNA-DNA ternary complex in the presence of magnesium
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6o0z
Q-score: 0.469
Zhu X, Clarke R, Puppala AK, Chittori S, Merk A, Merrill BJ, Simonovic M, Subramaniam S
Nat Struct Mol Biol (2019) 26 pp. 679-685 [ DOI: doi:10.1038/s41594-019-0258-2 Pubmed: 31285607 ]
- Target strand dna (12 kDa, DNA from synthetic construct)
- Single guide rna (33 kDa, RNA from synthetic construct)
- Crispr-associated endonuclease cas9/csn1 (158 kDa, Protein from Streptococcus pyogenes)
- Non-target strand dna (12 kDa, DNA from synthetic construct)
- Cas9-sgrna-dna ternary complex (Complex from Streptococcus pyogenes)