base module state 1 of Tetrahymena IFT-A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmc
Q-score: 0.414
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
- Ift-a_base-1 (Complex from Tetrahymena thermophila)
base module state 2 of Tetrahymena IFT-A
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hmd
Q-score: 0.197
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Ift-a_base-2 (Complex from Tetrahymena thermophila)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
Human IFT-A complex structures provide molecular insights into ciliary transport
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8fgw
Q-score: 0.406
Jiang M, Palicharla VR, Miller D, Hwang SH, Zhu H, Hixson P, Mukhopadhyay S, Sun J
Cell Res (2023) 33 pp. 288-298 [ DOI: doi:10.1038/s41422-023-00778-3 Pubmed: 36775821 ]
- Zinc ion (65 Da, Ligand)
- Wd repeat-containing protein 19 (151 kDa, Protein from Homo sapiens)
- Intraflagellar transport complex a (ift-a) (Complex from Homo sapiens)
- Intraflagellar transport protein 122 homolog (141 kDa, Protein from Homo sapiens)
- Intraflagellar transport protein 140 homolog (165 kDa, Protein from Homo sapiens)
- Tetratricopeptide repeat protein 21b (151 kDa, Protein from Homo sapiens)
- Wd repeat-containing protein 35 (133 kDa, Protein from Homo sapiens)
- Intraflagellar transport protein 43 homolog (23 kDa, Protein from Homo sapiens)
Structure of the IFT-A complex; IFT-A2 module
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8bbe
Q-score: 0.306
Hesketh SJ, Mukhopadhyay AG, Nakamura D, Toropova K, Roberts AJ
Cell (2022) 185 pp. 4971- [ DOI: doi:10.1016/j.cell.2022.11.010 Pubmed: 36462505 ]
- Intraflagellar transport protein 43 homolog (23 kDa, Protein from Homo sapiens)
- Ift-a complex; ift-a2 module (Complex from Homo sapiens)
- Intraflagellar transport protein 122 homolog (141 kDa, Protein from Homo sapiens)
- Snap-tag,tetratricopeptide repeat protein 21b (170 kDa, Protein from Homo sapiens)
- Wd repeat-containing protein 35 (134 kDa, Protein from Homo sapiens)
State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6yxx
Q-score: 0.389
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
- Kripp3 (58 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf25 (32 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)
- Kripp9 (89 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Trypanosoma brucei brucei)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Dead-box helicase, putative (85 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf27 (11 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- Unk (20 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Gtp-binding protein, putative (50 kDa, Protein from Trypanosoma brucei brucei)
- Unk (7 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l11, putative (40 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Unk (869 Da, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf29 (38 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- 50s ribosomal protein l17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (67 kDa, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l4/l1 family, putative (53 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (40 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l13, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- 12s ribosomal rna (365 kDa, RNA from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- Chaperone protein dnaj, putative (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf24 (49 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tetratricopeptide repeat (49 kDa, Protein from Trypanosoma brucei brucei)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Lipase (class 3) (58 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf21 (56 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (63 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf23 (63 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Pseudouridylate synthase, putative (46 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3 mitochondrial, putative (55 kDa, Protein from Trypanosoma brucei brucei)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)