Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me0
Q-score: 0.07
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ Pubmed: 27986852 DOI: doi:10.1093/nar/gkw1251 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- N-formylmethionine (177 Da, Ligand)
- 30s pre-initiation complex stalled by ge81112 (Complex from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 5me1
Q-score: 0.072
Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil-Carton D, Gualerzi CO, Fucini P, Connell SR
Nucleic Acids Res (2017) 45 pp. 2179-2187 [ Pubmed: 27986852 DOI: doi:10.1093/nar/gkw1251 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s pre-initiation complex ic-2 stalled by ge81112 (Complex from Escherichia coli)
- Fmet-trna (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-2 (97 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (19 kDa, Protein from Geobacillus stearothermophilus)
- N-formylmethionine (177 Da, Ligand)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-3 (16 kDa, Protein from Escherichia coli K-12)
- Translation initiation factor if-1 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Cryo-EM structure of prokaryotic 30S Translation Initiation Complex.
Simonetti A, Marzi S, Myasnikov AG, Fabbretti A, Yusupov M, Gualerzi CO, Klaholz BP
Nature (2008) 455 pp. 416-420 [ Pubmed: 18758445 DOI: doi:10.1038/nature07192 ]
- Fmet-trnafmet (25 kDa, RNA from Escherichia coli)
- 30s (850 kDa, Complex from Thermus thermophilus HB8)
- Messanger rna (8 kDa, RNA from Escherichia coli)
- Translation initiation factor if1 (8 kDa, Protein from Thermus thermophilus HB8)
- Translation initiation factor if2 (63 kDa, Protein from Thermus thermophilus HB8)
- Prokaryotic 30s translation initiation complex. t. thermophilus 30s ribosomal subunit complexed with t. thermophilus if1, t. thermophilus if2, e. coli fmet-trna and mk27 mrna. (900 kDa, Sample)