Resolution: 9.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6ftg
Q-score: 0.126
Braunger K, Pfeffer S, Shrimal S, Gilmore R, Berninghausen O, Mandon EC, Becker T, Forster F, Beckmann R
Science (2018) 360 pp. 215-219 [ Pubmed: 29519914 DOI: doi:10.1126/science.aar7899 ]
- Rpn2 (6 kDa, Protein from Dog)
- Ul13 (23 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosomal protein l37a (10 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (28 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- Ul2 (26 kDa, Protein from Rabbit)
- Ul22 (17 kDa, Protein from Rabbit)
- Ribosomal protein l14 (16 kDa, Protein from Rabbit)
- Ul14 (21 kDa, Protein from Rabbit)
- Ul23 (13 kDa, Protein from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,rpn1 (14 kDa, Protein from Dog)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a (80 kDa, Protein from Dog)
- El40 (6 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Tmem258 (5 kDa, Protein from Dog)
- El8 (27 kDa, Protein from Rabbit)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Ost48 (2 kDa, Protein from Dog)
- El13 (24 kDa, Protein from Rabbit)
- Ribosomal protein l24 (7 kDa, Protein from Rabbit)
- Ribosomal protein l4 (41 kDa, Protein from Rabbit)
- Ul30 (26 kDa, Protein from Rabbit)
- Ul3 (45 kDa, Protein from Rabbit)
- El38 (8 kDa, Protein from Rabbit)
- [(2~{s},3~{r},4~{r},5~{s},6~{r})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{z},6~{z},10~{z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid (651 Da, Ligand)
- 80s ribosome from wt canine rough microsomal membranes bound to the endoplasmic reticulum protein translocon (Complex)
- El34 (12 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- El20 (20 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- El28 (15 kDa, Protein from Rabbit)
- Oligosaccharyltransferase complex subunit ostc (13 kDa, Protein from Dog)
- El39 (6 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- El30 (10 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- El29 (14 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- Mammalian oligosaccharyltransferase (Complex from Canis lupus familiaris)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- El22 (11 kDa, Protein from Rabbit)
- Protein transport protein sec61 subunit beta (3 kDa, Protein from Dog)
- Protein transport protein sec61 subunit alpha isoform 1 (50 kDa, Protein from Dog)
- 60s ribosomal protein l36 (11 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- El19 (21 kDa, Protein from Rabbit)
- Ul14 (13 kDa, Protein from Rabbit)
- 60s ribosomal subunit (Complex from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Rabbit)
- Ost4 (3 kDa, Protein from Dog)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Sec61 protein conducting channel (Complex from Canis lupus familiaris)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Dog)
- Dad1 (8 kDa, Protein from Dog)
Resolution: 9.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 5a6u
Q-score: 0.143
Pfeffer S, Burbaum L, Unverdorben P, Pech M, Chen Y, Zimmermann R, Beckmann R, Foerster F
Nat Commun (2015) 6 pp. 8403-8403 [ Pubmed: 26411746 DOI: doi:10.1038/ncomms9403 ]
Pfeffer S, Burbaum L, Unverdorben P, Pech M, Chen Y, Zimmermann R, Beckmann R, Foerster F
Nat Commun (2015) 6 pp. 8403-8403 [ DOI: doi:10.1038/ncomms9403 Pubmed: 26411746 ]
Mammalian ribosome bound to the native Sec61 protein-conducting channel in the idle state
Pfeffer S, Burbaum L, Unverdorben P, Pech M, Chen Y, Zimmermann R, Beckmann R, Foerster F
Nat Commun (2015) 6 pp. 8403-8403 [ DOI: doi:10.1038/ncomms9403 Pubmed: 26411746 ]
Mammalian ribosome bound to the native Sec61 protein-conducting channel in the translocating state
Pfeffer S, Burbaum L, Unverdorben P, Pech M, Chen Y, Zimmermann R, Beckmann R, Foerster F
Nat Commun (2015) 6 pp. 8403-8403 [ DOI: doi:10.1038/ncomms9403 Pubmed: 26411746 ]
Representative tomogram of canine pancreatic rough Endoplasmic Reticulum vesicles
Pfeffer S, Burbaum L, Unverdorben P, Pech M, Chen Y, Zimmermann R, Beckmann R, Foerster F
Nat Commun (2015) 6 pp. 8403-8403 [ DOI: doi:10.1038/ncomms9403 Pubmed: 26411746 ]
Structure of the mammalian oligosaccharyl-transferase complex in the native ER protein translocon
Gogala M, Becker T, Beatrix B, Barrio-Garcia C, Berninghausen O, Beckmann R, Zimmermann R, Foerster F
Nat Commun (2014) 5 pp. 3072-3072 [ Pubmed: 24407213 DOI: doi:10.1038/ncomms4072 ]
- Canis familiaris sec61, ost and trap bound to a translocating wheat germ 80s ribosome (Sample)
- Translocon-associated protein omplex (Protein from Canis lupus familiaris)
- Sec61 (Protein from Canis lupus familiaris)
- Triticum aestivum 80s ribosome (Complex from Triticum aestivum)
- Oligosaccharyltransferase (Protein from Canis lupus familiaris)
Stalled mammalian ribosome bound to canine pancreatic microsomes
Pfeffer S, Dudek J, Gogala M, Schorr S, Linxweiler J, Lang S, Becker T, Beckmann R, Zimmermann R, Foerster F
Nat Commun (2014) 5 pp. 3072-3072 [ Pubmed: 24407213 DOI: doi:10.1038/ncomms4072 ]