Cryo-EM structure of Cas8-HNH system at full R-loop state
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8z0k
Q-score: 0.551
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (37-mer) (11 kDa, DNA from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at full r-loop state (Complex from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cryo-EM structure of Cas8-HNH system at partial R-loop state
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8z0l
Q-score: 0.549
Li X, Liu Y, Han J, Zhang L, Liu Z, Wang L, Zhang S, Zhang Q, Fu P, Yin H, Zhu H, Zhang H
EMBO J (2024) 43 pp. 4656-4667 [ Pubmed: 39251884 DOI: doi:10.1038/s44318-024-00229-8 ]
- Type i-f crispr-associated endoribonuclease cas6/csy4 (20 kDa, Protein from Selenomonas sp.)
- Dna (5'-d(p*gp*tp*gp*cp*gp*gp*a)-3') (2 kDa, DNA from Selenomonas sp.)
- Dna (32-mer) (9 kDa, DNA from Selenomonas sp.)
- Cryo-em structure of cas8-hnh system at partial r-loop state (Complex from Selenomonas sp.)
- Hnh endonuclease (39 kDa, Protein from Selenomonas sp.)
- Rna (69-mer) (22 kDa, RNA from Selenomonas sp.)
- Type i-f crispr-associated protein csy3 (37 kDa, Protein from Selenomonas sp.)
- Hypothetical protein j6n51_11000 (28 kDa, Protein from Selenomonas sp.)
Cryo-EM structure of Cascade-TniQ binary complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6v9q
Q-score: 0.515
Jia N, Xie W, de la Cruz MJ, Eng ET, Patel DJ
Cell Res (2020) 30 pp. 182-184 [ Pubmed: 31925391 DOI: doi:10.1038/s41422-019-0272-2 ]
- Rna (61-mer) (19 kDa, RNA from Vibrio cholerae)
- Zinc ion (65 Da, Ligand)
- Cascade-tniq binary complex (400 kDa, Complex from Vibrio cholerae)
- Cas8 (72 kDa, Protein from Vibrio cholerae)
- Tniq family protein (45 kDa, Protein from Vibrio cholerae)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (23 kDa, Protein from Vibrio cholerae)
- Type i-f crispr-associated protein csy3 (39 kDa, Protein from Vibrio cholerae)
VC-Tn6677 multisubunit CRISPR/Cas effector, open conformation.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6pig
Q-score: 0.459
Halpin-Healy TS, Klompe SE, Sternberg SH, Fernandez IS
Nature (2020) 577 pp. 271-274 [ Pubmed: 31853065 DOI: doi:10.1038/s41586-019-1849-0 ]
- Tniq monomer 1 (41 kDa, Protein from Vibrio cholerae)
- Vc-tn667 transposon encoded crispr/cas effector (600 kDa, Complex from Vibrio cholerae)
- Cas7 type i-f crispr-associated protein csy3 (39 kDa, Protein from Vibrio cholerae)
- Cas5_8 naturally occurring fusion protein from vibrio cholerae transposon tn6677 (57 kDa, Protein from Vibrio cholerae)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (22 kDa, Protein from Vibrio cholerae)
- Rna (60-mer) (19 kDa, RNA from Vibrio cholerae)
- Tniq monomer 2 (42 kDa, Protein from Vibrio cholerae)
VC-Tn6677 multisubunit CRISPR/Cas effector, close conformation.
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6pij
Q-score: 0.508
Halpin-Healy TS, Klompe SE, Sternberg SH, Fernandez IS
Nature (2020) 577 pp. 271-274 [ Pubmed: 31853065 DOI: doi:10.1038/s41586-019-1849-0 ]
- Targeting strand ssdna (8 kDa, DNA from Vibrio cholerae)
- Tniq monomer 2 (42 kDa, Protein from Vibrio cholerae)
- Non-targeting strand ssdna (2 kDa, DNA from Vibrio cholerae)
- Vc-tn667 transposon encoded crispr/cas effector (600 kDa, Complex from Vibrio cholerae)
- Type i-f crispr-associated endoribonuclease cas6/csy4 (22 kDa, Protein from Vibrio cholerae)
- Tniq monomer i (41 kDa, Protein from Vibrio cholerae)
- Cas5_8 naturally occurring fusion protein (57 kDa, Protein from Vibrio cholerae)
- Guide rna (19 kDa, RNA from Vibrio cholerae)
- Cas7 type i-f crispr-associated protein csy3 (39 kDa, Protein from Vibrio cholerae)