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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Unassigned" AND current_status:"REL" AND author_name:"N" AND xref_links:"drugbank"

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EMD-11732

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Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs

Release date: Dec. 2, 2020
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7ado
Q-score: 0.458

Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS

eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]

Sample:

Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
Unassigned helix (1 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)

[Show more]

EMD-4368

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Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Release date: Aug. 22, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449

Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N

Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]

Sample:

Spermine (202 Da, Ligand)
Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
Ul30m (18 kDa, Protein from Sus scrofa)
39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
Bs16m (15 kDa, Protein from Sus scrofa)
Ml65 (49 kDa, Protein from Sus scrofa)
Ms33 (12 kDa, Protein from Sus scrofa)
Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
Ml42 (16 kDa, Protein from Sus scrofa)
Ms31 (44 kDa, Protein from Sus scrofa)
28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
Bl32m (21 kDa, Protein from Sus scrofa)
P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
Ul23m (17 kDa, Protein from Sus scrofa)
Us17m (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
Ul14m (15 kDa, Protein from Sus scrofa)
Guanosine-5'-triphosphate (523 Da, Ligand)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Ribosomal protein (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Zinc ion (65 Da, Ligand)
Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Ms27 (51 kDa, Protein from Sus scrofa)
Ml54 (15 kDa, Protein from Sus scrofa)
Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Sodium ion (22 Da, Ligand)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
Ml43 (17 kDa, Protein from Sus scrofa)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
Bs21m (10 kDa, Protein from Sus scrofa)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Guanosine-5'-monophosphate (363 Da, Ligand)
Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
Water (18 Da, Ligand)
Ml53 (12 kDa, Protein from Sus scrofa)
Ul22m (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
Uncharacterized protein (27 kDa, Protein from Sus scrofa)
Death associated protein 3 (45 kDa, Protein from Sus scrofa)
39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
Ml45 (35 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
Ml50 (18 kDa, Protein from Sus scrofa)
Ml64 (25 kDa, Protein from Sus scrofa)
Ict1 (38 kDa, Protein from Sus scrofa)
Bl33m (7 kDa, Protein from Sus scrofa)
28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)

[Show more]

EMD-4369

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Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Release date: Aug. 8, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6gaz
Q-score: 0.462

Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N

Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]

Sample:

Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Spermine (202 Da, Ligand)
Mitochondrial ribosomal protein s17 (14 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s39 (76 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
Sodium ion (22 Da, Ligand)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
Bs16m, mrps16 (15 kDa, Protein from Sus scrofa)
Ms31, mrps31 (44 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
Mitochondrial ribosomal protein s9 (45 kDa, Protein from Sus scrofa)
Mammalian mitochondrial translation initiation complex (2 MDa, Complex)
Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s34 (25 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s21 (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
Death associated protein 3 (45 kDa, Protein from Sus scrofa)
Zinc ion (65 Da, Ligand)
Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s15 (27 kDa, Protein from Sus scrofa)
5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
Nucleic acids (Complex from Homo sapiens)
P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
Translation initiation factor if-2, mitochondrial (Complex from Homo sapiens)
Water (18 Da, Ligand)
Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
Mitochondrial ribosomal protein s37 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein s23 (21 kDa, Protein from Sus scrofa)
Guanosine-5'-triphosphate (523 Da, Ligand)
Porcine ribosome (Complex from Sus scrofa)
Mitochondrial ribosomal protein s33 (12 kDa, Protein from Sus scrofa)
Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)

[Show more]

EMD-4370

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Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Release date: Aug. 8, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gb2
Q-score: 0.481

Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N

Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]

Sample:

'mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l33 (7 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
Uncharacterized protein (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l58 (23 kDa, Protein from Sus scrofa)
Spermine (202 Da, Ligand)
Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l15 (33 kDa, Protein from Sus scrofa)
Mammalian mitochondrial ribosome (Complex from Sus scrofa)
Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
Sodium ion (22 Da, Ligand)
Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l32 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l17 (19 kDa, Protein from Sus scrofa)
Ml53, mrpl53 (12 kDa, Protein from Sus scrofa)
Magnesium ion (24 Da, Ligand)
Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l44 (37 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l14 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
Mammalian mitochondrial translation initiation complex (2 MDa, Complex)
Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
Ribosomal protein (10 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
Cp trnaphe, mitochondrial (23 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l50 (18 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
N-formylmethionine (177 Da, Ligand)
Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
Trna (Complex from Homo sapiens)
Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l24 (24 kDa, Protein from Sus scrofa)
Zinc ion (65 Da, Ligand)
Guanosine-5'-monophosphate (363 Da, Ligand)
Mitochondrial ribosomal protein l13 (20 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
Mitochondrial ribosomal protein l16 (28 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l23 (17 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
Translation initiation factor if-2, mitochondrial (Complex from Homo sapiens)
Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
'mitochondrial ribosomal protein l59 (25 kDa, Protein from Sus scrofa)
P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
Water (18 Da, Ligand)
Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
Ml65, mrps30 (49 kDa, Protein from Sus scrofa)
Ict1 (38 kDa, Protein from Sus scrofa)
Mrpl34 (18 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
'mitochondrial ribosomal protein l30 (18 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l42 (16 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l52 (13 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l22 (24 kDa, Protein from Sus scrofa)
Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)

[Show more]

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Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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Field: