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sample_name:"Unassigned" AND current_status:"REL" AND xref_links:"scop2"
Release date: Jan. 29, 2020
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6t9k
Q-score: 0.473
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6t9k
Q-score: 0.473
Wang H, Dienemann C, Stutzer A, Urlaub H, Cheung ACM, Cramer P
Nature (2020) 577 pp. 717-720 [ DOI: doi:10.1038/s41586-020-1933-5 Pubmed: 31969703 ]
Sample:
- Transcription initiation factor tfiid subunit 12 (61 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saga core module (500 kDa, Complex from Saccharomyces cerevisiae S288C)
- Unassigned sequence (11 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription initiation factor tfiid subunit 6 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor tfiid subunit 9 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcriptional activator spt7 (152 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcriptional coactivator hfi1/ada1 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription factor spt20 (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor tfiid subunit 5 (89 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Saga-associated factor 73 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Protein spt3 (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription initiation factor tfiid subunit 10 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Release date: Aug. 22, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
Sample:
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
- Ml65 (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Bs16m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Uncharacterized protein (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Ml45 (35 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Ml50 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Sodium ion (22 Da, Ligand)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Ml43 (17 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Ms31 (44 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
The complete structure of the small subunit processome
Release date: Sept. 27, 2017
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5wlc
Q-score: 0.373
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5wlc
Q-score: 0.373
Barandun J, Chaker-Margot M, Hunziker M, Molloy KR, Chait BT, Klinge S
Nat Struct Mol Biol (2017) 24 pp. 944-953 [ DOI: doi:10.1038/nsmb.3472 Pubmed: 28945246 ]
Sample:
- Utp30 (31 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop14 (85 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Fcf2 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp8 (65 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Emg1 (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp4 (87 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Mpp10 (67 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp1 (104 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps5_us7 (25 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp22 (140 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp9 (65 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Unassigned peptides (8 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 5' ets (225 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Rps7_es7 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps28_es28 (7 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Krr1 (37 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps9_us4 (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp24 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps22_us8 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop1 (34 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Imp4 (33 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Faf1 (38 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp7 (34 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Bms1 (135 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Sas10 (69 kDa, Protein from Saccharomyces cerevisiae BY4741)
- 18s pre-rrna (582 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Rps16_us9 (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp13 (75 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop58 (53 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps23_us12 (16 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp10 (200 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps4_es4 (29 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Bud21 (23 kDa, Protein from Saccharomyces cerevisiae BY4741)
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae BY4741)
- Small subunit processome (Complex from Saccharomyces cerevisiae BY4741)
- Lcp5 (40 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp18 (66 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp20 (83 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Sof1 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Kre33 (95 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp14 (101 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp12 (105 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp9 (64 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps18_us13 (16 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps8_es8 (22 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp15 (57 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps13_us15 (17 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Snu13 (13 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Pno1 (30 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrp5 (193 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rrt14 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp21 (104 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Zinc ion (65 Da, Ligand)
- Noc4 (58 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp6 (48 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps14_us11 (14 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp17 (100 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rcl1 (40 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Nop56 (56 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp11 (29 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps24_es24 (15 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Enp2 (81 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps6_es6 (27 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp5 (72 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Imp3 (21 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Rps11_us17 (17 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Utp7 (62 kDa, Protein from Saccharomyces cerevisiae BY4741)
- Enp1 (55 kDa, Protein from Saccharomyces cerevisiae BY4741)
Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)
Release date: March 29, 2017
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 5wyj
Q-score: 0.16
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 5wyj
Q-score: 0.16
Sun Q, Zhu X, Qi J, An W, Lan P, Tan D, Chen R, Wang B, Zheng S, Zhang C, Chen X, Zhang W, Chen J, Dong MQ, Ye K
eLife (2017) 6 [ Pubmed: 28244370 DOI: doi:10.7554/eLife.22086 ]
Sample:
- Enp2 (60 kDa, Protein from Baker's yeast)
- 90s small subunit pre-ribosome (dhr1-depleted, enp1-tap) (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (25 kDa, Protein from Baker's yeast)
- Rrna biogenesis protein rrp5 (193 kDa, Protein from Baker's yeast)
- U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Ribosomal rna small subunit methyltransferase nep1 (27 kDa, Protein from Baker's yeast)
- Nucleolar protein 56 (56 kDa, Protein from Baker's yeast)
- Helical domain protein (137 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 7 (34 kDa, Protein from Baker's yeast)
- Utp9 (48 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 9 (65 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- Essential nuclear protein 1 (55 kDa, Protein from Baker's yeast)
- Rrna-processing protein fcf1 (21 kDa, Protein from Baker's yeast)
- Unassigned helices (87 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 21 (104 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 22 (140 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 13 (91 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from Baker's yeast)
- Helical domain protein (84 kDa, Protein from Baker's yeast)
- Utp15 (43 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein bms1 (135 kDa, Protein from Baker's yeast)
- U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Baker's yeast)
- Mpp10,u3 small nucleolar rna-associated protein mpp10 (54 kDa, Protein from Baker's yeast)
- Utp4 (66 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- Sof1 (41 kDa, Protein from Baker's yeast)
- Rrna 2'-o-methyltransferase fibrillarin (34 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein utp30 (31 kDa, Protein from Baker's yeast)
- Utp7 (47 kDa, Protein from Baker's yeast)
- Utp17 (76 kDa, Protein from Baker's yeast)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 10,utp10 (173 kDa, Protein from Baker's yeast)
- Rna 3'-terminal phosphate cyclase-like protein (40 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (16 kDa, Protein from Baker's yeast)
- 18s ribosomal rna (583 kDa, RNA from Baker's yeast)
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (7 kDa, Protein from Baker's yeast)
- Utp11 (21 kDa, Protein from Baker's yeast)
- 5ets rna (225 kDa, RNA from Baker's yeast)
- Periodic tryptophan protein 2 (104 kDa, Protein from Baker's yeast)
- Nucleolar protein 58 (57 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
- Utp20 (212 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
- U3 rna (106 kDa, RNA from Baker's yeast)
- 40s ribosomal protein s13 (17 kDa, Protein from Baker's yeast)
- Utp8 (60 kDa, Protein from Baker's yeast)
- U3 small nucleolar rna-associated protein 12 (106 kDa, Protein from Baker's yeast)
- Utp5 (54 kDa, Protein from Baker's yeast)
- Krr1 small subunit processome component (37 kDa, Protein from Baker's yeast)