Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9au7
Q-score: 0.202
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ Pubmed: 39587083 DOI: doi:10.1038/s41467-024-54583-6 ]
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Sorting nexin-17 (2 kDa, Protein from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Consensus map)
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ Pubmed: 39587083 DOI: doi:10.1038/s41467-024-54583-6 ]
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (Protein from Homo sapiens)
- Sorting nexin-17 (Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (Protein from Homo sapiens)
Structure of the human Commander complex coiled coils, DENND10 and partial Retriever subcomplex
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 8p0v
Q-score: 0.259
Laulumaa S, Kumpula EP, Huiskonen JT, Varjosalo M
Nat Struct Mol Biol (2024) 31 pp. 925-938 [ Pubmed: 38459129 DOI: doi:10.1038/s41594-024-01246-1 ]
- Denn domain-containing protein 10 (40 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 93 (73 kDa, Protein from Homo sapiens)
- Human commander complex coiled coil region, partial retriever subcomplex (560 kDa, Complex from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (20 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 22 (70 kDa, Protein from Homo sapiens)
Structure of the human Commander complex Retriever Subcomplex
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 8p0x
Q-score: 0.257
Laulumaa S, Kumpula EP, Huiskonen JT, Varjosalo M
Nat Struct Mol Biol (2024) 31 pp. 925-938 [ Pubmed: 38459129 DOI: doi:10.1038/s41594-024-01246-1 ]
- Coiled-coil domain-containing protein 93 (73 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (20 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 22 (70 kDa, Protein from Homo sapiens)
- Human commander complex (560 kDa, Complex from Homo sapiens)
Human VPS29/VPS35L Complex (Locally refined map)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8sym
Q-score: 0.446
Human VPS35L/VPS29/VPS26C Complex
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syn
Q-score: 0.38
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2024) 31 pp. 910-924 [ DOI: doi:10.1038/s41594-023-01184-4 Pubmed: 38062209 ]
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syo
Q-score: 0.429
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2024) 31 pp. 910-924 [ DOI: doi:10.1038/s41594-023-01184-4 Pubmed: 38062209 ]
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)