Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9au7
Q-score: 0.202
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ Pubmed: 39587083 DOI: doi:10.1038/s41467-024-54583-6 ]
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Sorting nexin-17 (2 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Consensus map)
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ Pubmed: 39587083 DOI: doi:10.1038/s41467-024-54583-6 ]
- Vacuolar protein sorting-associated protein 29 (Protein from Homo sapiens)
- Sorting nexin-17 (Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (Protein from Homo sapiens)
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
Structure of the human Commander complex Retriever Subcomplex
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 8p0x
Q-score: 0.257
Laulumaa S, Kumpula EP, Huiskonen JT, Varjosalo M
Nat Struct Mol Biol (2024) 31 pp. 925-938 [ Pubmed: 38459129 DOI: doi:10.1038/s41594-024-01246-1 ]
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Human commander complex (560 kDa, Complex from Homo sapiens)
- Coiled-coil domain-containing protein 22 (70 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (20 kDa, Protein from Homo sapiens)
- Coiled-coil domain-containing protein 93 (73 kDa, Protein from Homo sapiens)
Human VPS35L/VPS29/VPS26C Complex
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syn
Q-score: 0.38
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2024) 31 pp. 910-924 [ Pubmed: 38062209 DOI: doi:10.1038/s41594-023-01184-4 ]
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syo
Q-score: 0.429
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2024) 31 pp. 910-924 [ Pubmed: 38062209 DOI: doi:10.1038/s41594-023-01184-4 ]
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
Mouse retromer (VPS26/VPS35 E615A/D616A/E617A mutant/VPS29) 3KE particle sub-structure
Kendall AK, Chandra M, Xie B, Wan W, Jackson LP
J Biol Chem (2022) 298 pp. 102523-102523 [ DOI: doi:10.1016/j.jbc.2022.102523 Pubmed: 36174678 ]
- Mouse retromer (vps26/vps35 e615a/d616a/e617a mutant/vps29) 3ke particle sub-structure (Complex from Mus musculus)
- Vacuolar protein sorting-associated protein 29 (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 26a (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 35 (e615a/d616a/e617a) (Protein from Mus musculus)
Mouse retromer (VPS26/VPS35 E615A/D616A/E617A mutant/VPS29) 3KE particle
Kendall AK, Chandra M, Xie B, Wan W, Jackson LP
J Biol Chem (2022) 298 pp. 102523-102523 [ DOI: doi:10.1016/j.jbc.2022.102523 Pubmed: 36174678 ]
- Mouse retromer (vps26/vps35 e615a/d616a/e617a mutant/vps29) 3ke particle (Complex from Mus musculus)
- Vacuolar protein sorting-associated protein 29 (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 26a (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 35 (e615a/d616a/e617a) (Protein from Mus musculus)
Mouse retromer (VPS26/VPS35/VPS29) dimer of heterotrimers
Kendall AK, Chandra M, Xie B, Wan W, Jackson LP
J Biol Chem (2022) 298 pp. 102523-102523 [ DOI: doi:10.1016/j.jbc.2022.102523 Pubmed: 36174678 ]
- Vacuolar protein sorting-associated protein 29 (Protein from Mus musculus)
- Mouse retromer (vps26/vps35/vps29) dimer of heterotrimers (Complex from Mus musculus)
- Vacuolar protein sorting-associated protein 35 (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 26a (Protein from Mus musculus)
Mouse retromer sub-structure: VPS35/VPS35 curved dimer
Kendall AK, Chandra M, Xie B, Wan W, Jackson LP
J Biol Chem (2022) 298 pp. 102523-102523 [ DOI: doi:10.1016/j.jbc.2022.102523 Pubmed: 36174678 ]
- Vacuolar protein sorting-associated protein 29 (Protein from Mus musculus)
- Mouse retromer sub-structure: vps35/vps35 curved dimer (Complex from Mus musculus)
- Vacuolar protein sorting-associated protein 26a (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 35 (Protein from Mus musculus)
Mouse retromer sub-structure: VPS35/VPS35 flat substructure
Kendall AK, Chandra M, Xie B, Wan W, Jackson LP
J Biol Chem (2022) 298 pp. 102523-102523 [ DOI: doi:10.1016/j.jbc.2022.102523 Pubmed: 36174678 ]
- Vacuolar protein sorting-associated protein 29 (Protein from Mus musculus)
- Mouse retromer sub-structure: vps35/vps35 flat dimer (Complex from Mus musculus)
- Vacuolar protein sorting-associated protein 26a (Protein from Mus musculus)
- Vacuolar protein sorting-associated protein 35 (Protein from Mus musculus)