Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8yvz
Q-score: 0.305
To Be Published
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Semliki forest virus viron in complex with vldlr-la3 (Cellular component from Semliki Forest virus 4)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8yw0
Q-score: 0.225
To Be Published
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus 4)
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus 4)
- Semliki forest virus viron in complex with vldlr-la5 (Cellular component from Semliki Forest virus 4)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Capsid protein, partial (17 kDa, Protein from Semliki Forest virus 4)
- Calcium ion (40 Da, Ligand)
- Spike glycoprotein e3 (5 kDa, Protein from Semliki Forest virus 4)
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(2-fold)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0k
Q-score: 0.436
To Be Published
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Cryo-em structure of semliki forest virus in complex with its receptor vldlr(2-fold) (Complex from Semliki Forest virus)
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (17 kDa, Protein from Semliki Forest virus)
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(3-fold)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0l
Q-score: 0.455
To Be Published
- Pike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Cryo-em structure of semliki forest virus in complex with its receptor vldlr(3-fold) (Complex from Semliki Forest virus)
- Pike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (17 kDa, Protein from Semliki Forest virus)
Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(5-fold)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8x0m
Q-score: 0.405
To Be Published
- Cryo-em structure of semliki forest virus in complex with its receptor vldlr(5-fold) (Complex from Semliki Forest virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Semliki Forest virus)
- Spike glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
- Spike glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid protein (17 kDa, Protein from Semliki Forest virus)
Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA1-2
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- Very low-density lipoprotein receptor (9 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- East equine encephalitis virus vlp in complex with its receptor vldlr la1-2 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
Structure of Eastern Equine Encephalitis VLP in complex with the receptor VLDLR LA3-5
Cao D, Ma B, Cao Z, Xu X, Zhang X, Xiang Y
Nat Commun (2024) 15 pp. 6866-6866 [ Pubmed: 39127734 DOI: doi:10.1038/s41467-024-51293-x ]
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- East equine encephalitis virus vlp in complex with its receptor vldlr la3-5 at the asymmetric unit (Complex from Eastern equine encephalitis virus)
- Spike glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
Structure of eastern equine encephalitis virus VLP in complex with VLDLR LA1
Yang P, Li W, Fan X, Pan J, Mann CJ, Varnum H, Clark LE, Clark SA, Coscia A, Basu H, Smith KN, Brusic V, Abraham J
Nat Commun (2024) 15 pp. 6548-6548 [ Pubmed: 39095394 DOI: doi:10.1038/s41467-024-50887-9 ]
- Envelope glycoprotein e3 (7 kDa, Protein from Eastern equine encephalitis virus)
- Envelope glycoprotein e2 (47 kDa, Protein from Eastern equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Eeev strain pe6 mature capsid protein (Complex from Eastern equine encephalitis virus)
- Eeev strain pe6 mature glycoprotein e3 (Complex from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Eeev strain pe6 mature glycoprotein e1 (Complex from Eastern equine encephalitis virus)
- Eeev strain pe6 mature glycoprotein e2 (Complex from Eastern equine encephalitis virus)
- Vldlr (Complex from Homo sapiens)
- Envelope glycoprotein e1 (47 kDa, Protein from Eastern equine encephalitis virus)
- Capsid protein (29 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
Structure of Semliki Forest virus VLP in complex with VLDLR LA2
Abraham J, Yang P, Li W, Fan X, Pan J
To Be Published
- Glycoprotein e1 (47 kDa, Protein from Semliki Forest virus)
- Very low-density lipoprotein receptor (4 kDa, Protein from Homo sapiens)
- Capsid protein (16 kDa, Protein from Semliki Forest virus)
- Semliki forest virus (Virus from Semliki Forest virus)
- Assembly protein e3 (6 kDa, Protein from Semliki Forest virus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glycoprotein e2 (46 kDa, Protein from Semliki Forest virus)
Eastern equine encephalitis virus (PE-6) VLP in complex with full-length VLDLR (asymmetric unit)
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8ufb
Q-score: 0.336
Adams LJ, Raju S, Ma H, Gilliland Jr T, Reed DS, Klimstra WB, Fremont DH, Diamond MS
Cell (2024) 187 pp. 360-374.e19 [ DOI: doi:10.1016/j.cell.2023.11.031 Pubmed: 38176410 ]
- E1 protein (47 kDa, Protein from Eastern equine encephalitis virus)
- E2 protein (46 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Capsid protein (16 kDa, Protein from Eastern equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Isoform short of very low-density lipoprotein receptor (82 kDa, Protein from Homo sapiens)