Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 1)
Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y
Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]
- Widom 601 dna (147-mer) with 60 base pairs flanking dna (forward strand) (DNA from synthetic construct)
- Histone h2a type 1 (Protein from Xenopus laevis)
- Histone h2b 1.1 (Protein from Xenopus laevis)
- Histone h3.2 (Protein from Xenopus laevis)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 5 (Protein from Homo sapiens)
- Histone h4 (Protein from Xenopus laevis)
- Widom 601 dna (147-mer) with 60 base pairs flanking dna (reverse strand) (DNA from synthetic construct)
- Atp-dependent chromatin remodeler snf2h in complex with nucleosome (300 kDa, Complex)
- Nucleosome with xenopus laevis histones (200 kDa, Complex)
- Snf2h (100 kDa, Complex from Homo sapiens)
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 2)
Chio US, Palovcak E, Smith AAA, Autzen H, Munoz EN, Yu Z, Wang F, Agard DA, Armache JP, Narlikar GJ, Cheng Y
Nat Commun (2024) 15 pp. 2225-2225 [ Pubmed: 38472177 DOI: doi:10.1038/s41467-024-46178-y ]
- Widom 601 dna (147-mer) with 60 base pairs flanking dna (forward strand) (DNA from synthetic construct)
- Histone h2a type 1 (Protein from Xenopus laevis)
- Histone h2b 1.1 (Protein from Xenopus laevis)
- Histone h3.2 (Protein from Xenopus laevis)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 5 (Protein from Homo sapiens)
- Histone h4 (Protein from Xenopus laevis)
- Widom 601 dna (147-mer) with 60 base pairs flanking dna (reverse strand) (DNA from synthetic construct)
- Atp-dependent chromatin remodeler snf2h in complex with nucleosome (300 kDa, Complex)
- Nucleosome with xenopus laevis histones (200 kDa, Complex)
- Snf2h (100 kDa, Complex from Homo sapiens)
H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8pc5
Q-score: 0.521
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- H3k36me3 nucleosome-ledgf/p75 pwwp domain complex (Complex)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histones (Complex from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (Complex from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (Complex from Homo sapiens)
H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8pc6
Q-score: 0.484
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histones (Complex from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Dna (Complex from synthetic construct)
- H3k36me3 nucleosome-ledgf/p75 pwwp domain complex - pose 2 (Complex)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (Complex from Homo sapiens)
H3K36me2 nucleosome-LEDGF/p75 PWWP domain complex - pose 2
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8pep
Q-score: 0.399
Koutna E, Lux V, Kouba T, Skerlova J, Novacek J, Srb P, Hexnerova R, Svachova H, Kukacka Z, Novak P, Fabry M, Poepsel S, Veverka V
Nucleic Acids Res (2023) 51 pp. 10011-10025 [ DOI: doi:10.1093/nar/gkad674 Pubmed: 37615563 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- H3k36me2 nucleosome-ledgf/p75 pwwp domain complex - pose 2 (Complex from Xenopus laevis)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
Cryo-EM structure of the left-handed Di-tetrasome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y5w
Q-score: 0.35
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Dna (Complex)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- H3-h4 (Complex)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- A left-handed di-tetrasome (Complex from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
Cryo-EM structure of human CAF1LC bound right-handed Di-tetrasome
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y60
Q-score: 0.304
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Chromatin assembly factor 1 subunit b (46 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- The caf1lc bound right-handed di-tetrasome (Complex from Homo sapiens)
- Chromatin assembly factor 1 subunit a (47 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
Cryo-EM structure of the single CAF-1 bound right-handed Di-tetrasome
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8j6s
Q-score: 0.301
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ DOI: doi:10.1126/science.add8673 Pubmed: 37616371 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit a (107 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (61 kDa, Protein from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- The caf-1 bound right-handed di-tetrasome (Complex from Homo sapiens)
- Widom 601 dna (147-mer) (45 kDa, DNA from synthetic construct)