Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxg
Q-score: 0.485
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C8 scfv heavy chain (13 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- C8 scfv light chain (12 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxh
Q-score: 0.535
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C10 light chain (11 kDa, Protein from Homo sapiens)
- C10 heavy chain (14 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8cxi
Q-score: 0.464
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- Zika virus (Virus from Zika virus)
- A11 light chain (11 kDa, Protein from Homo sapiens)
- A11 heavy chain (14 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
- Membrane m protein (379 kDa, Protein from Zika virus)
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7yar
Q-score: 0.134
Adams C, Carbaugh DL, Shu B, Ng TS, Castillo IN, Bhowmik R, Segovia-Chumbez B, Puhl AC, Graham S, Diehl SA, Lazear HM, Lok SM, de Silva AM, Premkumar L
PLoS Pathog (2023) 19 pp. e1010814-e1010814 [ DOI: doi:10.1371/journal.ppat.1010814 Pubmed: 36626401 ]
- E protein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Zika virus zikv/h. (Complex from Homo sapiens)
- Heavy chain, light chain (Complex)
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Heavy chain (24 kDa, Protein from Homo sapiens)
- Light chain (22 kDa, Protein from Homo sapiens)
- M protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
Zika Virus particle bound with IgM antibody DH1017 Fab fragment
Resolution: 5.26 Å
EM Method: Single-particle
Fitted PDBs: 7t17
Q-score: 0.264
Singh T, Hwang KK, Miller AS, Jones RL, Lopez CA, Dulson SJ, Giuberti C, Gladden MA, Miller I, Webster HS, Eudailey JA, Luo K, Von Holle T, Edwards RJ, Valencia S, Burgomaster KE, Zhang S, Mangold JF, Tu JJ, Dennis M, Alam SM, Premkumar L, Dietze R, Pierson TC, Ooi EE, Lazear HM, Kuhn RJ, Permar SR, Bonsignori M
Cell (2022) 185 pp. 4826-4840.e17 [ DOI: doi:10.1016/j.cell.2022.10.023 Pubmed: 36402135 ]
- Core protein (42 kDa, Protein from Zika virus)
- Zika virus (Virus from Zika virus)
- Dh1017.igm fabc constant domain (10 kDa, Protein from Homo sapiens)
- Dh1017.igm igl (11 kDa, Protein from Homo sapiens)
- Dh1017.igm igh (13 kDa, Protein from Homo sapiens)
- Dh1017.igm lambdac constant domain (11 kDa, Protein from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7kcr
Q-score: 0.436
Sevvana M, Rogers TF, Miller AS, Long F, Klose T, Beutler N, Lai YC, Parren M, Walker LM, Buda G, Burton DR, Rossmann MG, Kuhn RJ
Viruses (2020) 12 [ Pubmed: 33255202 DOI: doi:10.3390/v12121346 ]
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Zika virus in complex with monoclonal antibody adi30056 (15 MDa, Complex)
- Adi30056 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- Adi30056 fab heavy chain variable region (13 kDa, Protein from Homo sapiens)
- Envelope protein e (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Membrane protein m (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Monoclonal antibody adi30056 (Complex from Homo sapiens)
Helical reconstruction of Zika virus complexed with Fab C10
Resolution: 9.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7c2t
Q-score: 0.093
Morrone SR, Chew VSY, Lim XN, Ng TS, Kostyuchenko VA, Zhang S, Wirawan M, Chew PL, Lee J, Tan JL, Wang J, Tan TY, Shi J, Screaton G, Morais MC, Lok SM
Nat Commun (2020) 11 pp. 3112-3112 [ Pubmed: 32561757 DOI: doi:10.1038/s41467-020-16925-y ]
- Envelope protein (54 kDa, Protein from Zika virus)
- C10 fab (Complex from Homo sapiens)
- Zika virus h/pf/2013 strain (Complex from Zika virus)
- Heavy chain from fab c10 (14 kDa, Protein from Homo sapiens)
- Light chain from fab c10 (11 kDa, Protein from Homo sapiens)
- M protein (8 kDa, Protein from Zika virus)
- Helical reconstruction of zika virus complexed with fab c10 (Complex)
CryoEM structure of Zika virus with Fab at 4.1 Angstrom
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7cbp
Q-score: 0.311
Tyagi A, Ahmed T, Shi J, Bhushan S
J Struct Biol X (2020) 4 pp. 100028-100028 [ DOI: doi:10.1016/j.yjsbx.2020.100028 Pubmed: 32647830 ]
- Small envelope protein m (8 kDa, Protein from ZIKV)
- Envelope protein e (54 kDa, Protein from ZIKV)
- Zika virus (Complex)
- Zika virus m and e proteins (Complex from Zika virus)
- Fab light chain (23 kDa, Protein from Homo sapiens)
- Fab (Complex from Homo sapiens)
- Fab heavy chain (23 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7bu8
Q-score: 0.397
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- Genome polyprotein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab (Complex)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zika virus (Complex from Homo sapiens)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
- Zika virus m protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Complex of zika virus with sign-3c fab (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7bua
Q-score: 0.249
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- Genome polyprotein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab (Complex)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zika virus (Complex from Homo sapiens)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
- Zika virus m protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Complex of zika virus with sign-3c fab (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)