Rabies virus glycoprotein pre-fusion trimer in complex with neutralizing antibody RVA122
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7u9g
Q-score: 0.459
Callaway HM, Zyla D, Larrous F, de Melo GD, Hastie KM, Avalos RD, Agarwal A, Corti D, Bourhy H, Saphire EO
Sci Adv (2022) 8 pp. eabp9151-eabp9151 [ DOI: doi:10.1126/sciadv.abp9151 Pubmed: 35714192 ]
- Rva122 fab light chain (23 kDa, Protein from Homo sapiens)
- Rabies virus glycoprotein pre-fusion trimer in complex with neutralizing antibody rva122 (Complex)
- Glycoprotein (49 kDa, Protein from Rabies virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rva122 fab heavy chain (28 kDa, Protein from Homo sapiens)
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 6lnt
Q-score: 0.127
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ DOI: doi:10.1038/s41467-020-14647-9 Pubmed: 32060358 ]
- Zika virus zikv/h. sapiens/frenchpolynesia/10087pf/2013 (Virus)
- Zika virus (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Fab dv62.5 heavy-chain variable region (13 kDa, Protein from Homo sapiens)
- Envelope protein (54 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Fab dv62.5 light-chain variable region (11 kDa, Protein from Homo sapiens)
- Pre-membrane protein (18 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
- Anti-prm antibody dv62.5 (Complex from Homo sapiens)
- Capsid protein (12 kDa, Protein from Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6nb3
Q-score: 0.402
Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder J, Quispe J, Cameroni E, Gopal R, Dai M, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D
Cell (2019) 176 pp. 1026-1039.e15 [ Pubmed: 30712865 DOI: doi:10.1016/j.cell.2018.12.028 ]
- Mers-cov complex with human neutralizing lca60 antibody fab fragment (state 1) (572 MDa, Complex from Middle East respiratory syndrome coronavirus)
- Spike glycoprotein (149 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
- Lca60 light chain (11 kDa, Protein from Homo sapiens)
- Lca60 heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6nb4
Q-score: 0.403
Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder J, Quispe J, Cameroni E, Gopal R, Dai M, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D
Cell (2019) 176 pp. 1026-1039.e15 [ Pubmed: 30712865 DOI: doi:10.1016/j.cell.2018.12.028 ]
- Lca60 light chain (11 kDa, Protein from Homo sapiens)
- Mers-cov complex with human neutralizing lca60 antibody fab fragment (state 2) (570 kDa, Complex from Middle East respiratory syndrome coronavirus)
- Spike glycoprotein (149 kDa, Protein from Middle East respiratory syndrome coronavirus)
- Lca60 heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6nb6
Q-score: 0.338
Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder J, Quispe J, Cameroni E, Gopal R, Dai M, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D
Cell (2019) 176 pp. 1026-1039.e15 [ Pubmed: 30712865 DOI: doi:10.1016/j.cell.2018.12.028 ]
- S230 light chain (12 kDa, Protein from Homo sapiens)
- Sars-cov s complex with human neutralizing s230 antibody fab fragment (state 1) (572 MDa, Complex from SARS coronavirus)
- Spike glycoprotein (139 kDa, Protein from SARS coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S230 heavy chain (14 kDa, Protein from Homo sapiens)
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6nb7
Q-score: 0.265
Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder J, Quispe J, Cameroni E, Gopal R, Dai M, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D
Cell (2019) 176 pp. 1026-1039.e15 [ Pubmed: 30712865 DOI: doi:10.1016/j.cell.2018.12.028 ]
- S230 light chain (12 kDa, Protein from Homo sapiens)
- Sars-cov s complex with human neutralizing s230 antibody fab fragment (state 2) (572 MDa, Complex from SARS coronavirus)
- Spike glycoprotein (139 kDa, Protein from SARS coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S230 heavy chain (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree
Resolution: 22.0 Å
EM Method: Single-particle
Fitted PDBs: 5y0a
Q-score: 0.044
Wang J, Bardelli M, Espinosa DA, Pedotti M, Ng TS, Bianchi S, Simonelli L, Lim EXY, Foglierini M, Zatta F, Jaconi S, Beltramello M, Cameroni E, Fibriansah G, Shi J, Barca T, Pagani I, Rubio A, Broccoli V, Vicenzi E, Graham V, Pullan S, Dowall S, Hewson R, Jurt S, Zerbe O, Stettler K, Lanzavecchia A, Sallusto F, Cavalli A, Harris E, Lok SM, Varani L, Corti D
Cell (2017) 171 pp. 229-241.e15 [ DOI: doi:10.1016/j.cell.2017.09.002 Pubmed: 28938115 ]
- Variable region of fab zka190 light chain (11 kDa, Protein from Homo sapiens)
- Zika virus (Complex)
- Variable region of fab zka190 heavy chain (14 kDa, Protein from Homo sapiens)
- Zika virus complexed with fab of a human monoclonal antibody named zka190 (Complex from Zika virus)
- Protein e (44 kDa, Protein from Zika virus (strain Mr 766))
- Fab zka190 (Complex)
Wang J, Bardelli M, Espinosa DA, Pedotti M, Ng TS, Bianchi S, Simonelli L, Lim EXY, Foglierini M, Zatta F, Jaconi S, Beltramello M, Cameroni E, Fibriansah G, Shi J, Barca T, Pagani I, Rubio A, Broccoli V, Vicenzi E, Graham V, Pullan S, Dowall S, Hewson R, Jurt S, Zerbe O, Stettler K, Lanzavecchia A, Sallusto F, Cavalli A, Harris E, Lok SM, Varani L, Corti D
Cell (2017) 171 pp. 229-241.e15 [ DOI: doi:10.1016/j.cell.2017.09.002 Pubmed: 28938115 ]