Negative stain EM map of 1E01 Fab in complex with N2 Singapore16
Stadlbauer D, McMahon M, Turner HL, Zhu X, Wan H, Carreno JM, O'Dell G, Strohmeier S, Khalil Z, Luksza M, van Bakel H, Simon V, Ellebedy AH, Wilson IA, Ward AB, Krammer F
Nat Commun (2022) 13 pp. 7864-7864 [ Pubmed: 36543789 DOI: doi:10.1038/s41467-022-35586-7 ]
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 45A
Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB
J Virol (2020) 94 [ DOI: doi:10.1128/JVI.01861-19 Pubmed: 31941772 ]
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6pw6
Q-score: 0.354
Stanfield RL, Berndsen ZT, Huang R, Sok D, Warner G, Torres JL, Burton DR, Ward AB, Wilson IA, Smider VV
Sci Adv (2020) 6 pp. eaba0468-eaba0468 [ Pubmed: 32518821 DOI: doi:10.1126/sciadv.aba0468 ]
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Broadly neutralizing antibody nc-cow1 heavy chain (28 kDa, Protein from Bos taurus)
- Envelope glycoprotein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- A complex of the hiv-1 envelope glycoprotein clone bg505 sosip.664 and 3 copies of the bovine fab nc-cow1 (Complex)
- Bovine fab nc-cow1 (Complex from Bos taurus)
- Envelope glycoprotein clone bg505 sosip.664 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 6vpx
Q-score: 0.2
Rantalainen K, Berndsen ZT, Antanasijevic A, Schiffner T, Zhang X, Lee WH, Torres JL, Zhang L, Irimia A, Copps J, Zhou KH, Kwon YD, Law WH, Schramm CA, Verardi R, Krebs SJ, Kwong PD, Doria-Rose NA, Wilson IA, Zwick MB, Yates 3rd JR, Schief WR, Ward AB
Cell Rep (2020) 31 pp. 107583-107583 [ DOI: doi:10.1016/j.celrep.2020.107583 Pubmed: 32348769 ]
- Mper peptide (Complex from Homo sapiens)
- 10e8 fab (Complex from Homo sapiens)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs (Complex)
- (2r)-3-(phosphonooxy)propane-1,2-diyl dihexanoate (368 Da, Ligand)
- Envelope glycoprotein gp120 (51 kDa, Protein from Human immunodeficiency virus 1)
- Antibody 10e8 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Antibody 10e8 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody pgt151 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody pgt151 fab heavy chain (15 kDa, Protein from Homo sapiens)
- Amc011 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt151 fab (Complex from Homo sapiens)
- Mper peptide (2 kDa, Protein from Homo sapiens)
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 6u59
Q-score: 0.393
Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB
J Virol (2020) 94 [ DOI: doi:10.1128/JVI.01861-19 Pubmed: 31941772 ]
- Sosip.664 gp120,sosip.664 gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Rabbit antibody 13b (Complex from Oryctolagus cuniculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rabbit antibody 13b fragment antigen binding light chain (11 kDa, Protein from Oryctolagus cuniculus)
- Hiv-1 b41 sosip.664 (Complex from Human immunodeficiency virus 1)
- Hiv-1 b41 sosip.664 in complex with rabbit antibody 13b (570 kDa, Complex)
- Sosip.664 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Rabbit antibody 13b fragment antigen binding heavy chain (12 kDa, Protein from Oryctolagus cuniculus)
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 48A
Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB
J Virol (2020) 94 [ DOI: doi:10.1128/JVI.01861-19 Pubmed: 31941772 ]
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 49A
Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB
J Virol (2020) 94 [ DOI: doi:10.1128/JVI.01861-19 Pubmed: 31941772 ]
B41 SOSIP.664 in complex with rabbit antibody 45A
Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB
J Virol (2020) 94 [ DOI: doi:10.1128/JVI.01861-19 Pubmed: 31941772 ]
Full length HIV-1 Envelope glycoprotein clone AMC011 in complex with PGT151 Fab and PGZL1 Fab
Zhang L, Irimia A, He L, Landais E, Rantalainen K, Leaman DP, Vollbrecht T, Stano A, Sands DI, Kim AS, Poignard P, Burton DR, Murrell B, Ward AB, Zhu J, Wilson IA, Zwick MB
Nat Commun (2019) 10 pp. 5389-5389 [ DOI: doi:10.1038/s41467-019-12973-1 Pubmed: 31772165 ]
CryoEM map of NA-73 Fab in complex with N9 Shanghai2
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 6pzy
Q-score: 0.527
Zhu X, Turner HL, Lang S, McBride R, Bangaru S, Gilchuk IM, Yu W, Paulson JC, Crowe Jr JE, Ward AB, Wilson IA
Cell Host Microbe (2019) 26 pp. 729- [ DOI: doi:10.1016/j.chom.2019.10.002 Pubmed: 31757767 ]
- Na-73 fragment antibody heavy chain (24 kDa, Protein from Homo sapiens)
- N9 shanghai2 (Complex from Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)))
- Na-73 fab in complex with n9 shanghai2 (Complex)
- Na-73 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Na-73 fragment antibody light chain (22 kDa, Protein from Homo sapiens)
- Neuraminidase (48 kDa, Protein from Influenza A virus (A/environment/Shanghai/S1439/2013(H7N9)))