Resolution: 5.87 Å
EM Method: Single-particle
Fitted PDBs: 8xq3
Q-score: -0.012
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 8jn3
Q-score: 0.211
Fibriansah G, Ng TS, Lim XN, Shebanova A, Ng LC, Tan SL, Tan AWK, Shi J, Crowe JE, Lok SM
To Be Published
- Dengue virus serotype 3 strain 863dk (Complex from Dengue virus type 3)
- Human antibody denv-115 light chain (11 kDa, Protein from Homo sapiens)
- Envelope protein (53 kDa, Protein from Dengue virus type 3)
- Dengue virus serotype 3 strain 863dk in complex with human antibody denv-115 fab at 37 deg c (Complex)
- Human antibody denv-115 heavy chain (13 kDa, Protein from Homo sapiens)
- Membrane protein (8 kDa, Protein from Dengue virus type 3)
- Human antibody denv-115 fab (heavy and light chain) (Complex from Homo sapiens)
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Resolution: 5.14 Å
EM Method: Single-particle
Fitted PDBs: 8jtm
Q-score: 0.166
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- Cne55.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
Resolution: 5.84 Å
EM Method: Single-particle
Fitted PDBs: 8dun
Q-score: 0.214
Sutton MS, Pletnev S, Callahan V, Ko S, Tsybovsky Y, Bylund T, Casner RG, Cerutti G, Gardner CL, Guirguis V, Verardi R, Zhang B, Ambrozak D, Beddall M, Lei H, Yang ES, Liu T, Henry AR, Rawi R, Schon A, Schramm CA, Shen CH, Shi W, Stephens T, Yang Y, Florez MB, Ledgerwood JE, Burke CW, Shapiro L, Fox JM, Kwong PD, Roederer M
Cell (2023) 186 pp. 2672-2689.e25 [ Pubmed: 37295404 DOI: doi:10.1016/j.cell.2023.05.019 ]
- Spike glycoprotein e1 (52 kDa, Protein from Western equine encephalitis virus)
- Spike glycoprotein e2 (45 kDa, Protein from Western equine encephalitis virus)
- Antibody skw11 heavy chain (24 kDa, Protein from Macaca fascicularis)
- Western equine encephalitis virus trimer in complex with antibody fab skw11 (Complex from Western equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody skw11 light chain (23 kDa, Protein from Macaca fascicularis)
Locally refined region of SARS-CoV-2 spike in complex with antibody A19-46.1
Resolution: 5.08 Å
EM Method: Single-particle
Fitted PDBs: 7tc9
Q-score: 0.221
Zhou T, Wang L, Misasi J, Pegu A, Zhang Y, Harris DR, Olia AS, Talana CA, Yang ES, Chen M, Choe M, Shi W, Teng IT, Creanga A, Jenkins C, Leung K, Liu T, Stancofski ED, Stephens T, Zhang B, Tsybovsky Y, Graham BS, Mascola JR, Sullivan NJ, Kwong PD
Science (2022) 376 pp. eabn8897-eabn8897 [ Pubmed: 35324257 DOI: doi:10.1126/science.abn8897 ]
- Light chain of antibody a19-46.1 (22 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike in complex with antibody a19-46.1, local refinement. (570 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of antibody a19-46.1 (24 kDa, Protein from Homo sapiens)
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 6vpx
Q-score: 0.2
Rantalainen K, Berndsen ZT, Antanasijevic A, Schiffner T, Zhang X, Lee WH, Torres JL, Zhang L, Irimia A, Copps J, Zhou KH, Kwon YD, Law WH, Schramm CA, Verardi R, Krebs SJ, Kwong PD, Doria-Rose NA, Wilson IA, Zwick MB, Yates 3rd JR, Schief WR, Ward AB
Cell Rep (2020) 31 pp. 107583-107583 [ DOI: doi:10.1016/j.celrep.2020.107583 Pubmed: 32348769 ]
- Mper peptide (Complex from Homo sapiens)
- 10e8 fab (Complex from Homo sapiens)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs (Complex)
- (2r)-3-(phosphonooxy)propane-1,2-diyl dihexanoate (368 Da, Ligand)
- Envelope glycoprotein gp120 (51 kDa, Protein from Human immunodeficiency virus 1)
- Antibody 10e8 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Antibody 10e8 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody pgt151 fab light chain (11 kDa, Protein from Homo sapiens)
- Antibody pgt151 fab heavy chain (15 kDa, Protein from Homo sapiens)
- Amc011 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt151 fab (Complex from Homo sapiens)
- Mper peptide (2 kDa, Protein from Homo sapiens)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6nc2
Q-score: 0.216
Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA
Cell Host Microbe (2019) 25 pp. 873- [ Pubmed: 31194940 DOI: doi:10.1016/j.chom.2019.04.011 ]
- Amc011 v4.2 sosip gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Complex of amc011 v4.2 sosip trimer and acs202 fragment antigen binding (570 kDa, Complex)
- Monoclonal antibody acs202 fragment antigen binding heavy chain (27 kDa, Protein from Homo sapiens)
- Vrc34.01 (Complex from Homo sapiens)
- Amc011 v4.2 sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 env amc011 v4.2 sosip gp41 (Complex from Human immunodeficiency virus 1)
- Monoclonal antibody acs202 fragment antigen binding kappa chain (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv-1 env amc011 v4.2 sosip gp120 (Complex from Human immunodeficiency virus 1)
MERS S ectodomain trimer in complex with Fab of neutralizing antibody G4
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 5w9n
Q-score: 0.214
Pallesen J, Wang N, Corbett KS, Wrapp D, Kirchdoerfer RN, Turner HL, Cottrell CA, Becker MM, Wang L, Shi W, Kong WP, Andres EL, Kettenbach AN, Denison MR, Chappell JD, Graham BS, Ward AB, McLellan JS
PNAS (2017) 114 pp. E7348-E7357 [ DOI: doi:10.1073/pnas.1707304114 Pubmed: 28807998 ]
- Mers s (146 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
- G4 vh (25 kDa, Protein from Mus musculus)
- G4 vl (23 kDa, Protein from Mus musculus)
- Mers s ectodomain trimer in complex with fab of neutralizing antibody g4 (600 kDa, Complex from Middle East respiratory syndrome-related coronavirus)
The cryoEM map of EV71 VLP in complex with intact antibody D5
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 3jau
Q-score: 0.016
Ye XH, Fan C, Ku ZQ, Zuo T, Kong LL, Zhang C, Shi JP, Liu QW, Chen T, Zhang YY, Jiang W, Zhang LQ, Huang Z, Cong Y
PLoS Pathog (2016) 12 pp. e1005454-e1005454 [ Pubmed: 26938634 DOI: doi:10.1371/journal.ppat.1005454 ]
- Human enterovirus 71 (5 MDa, Virus from Human enterovirus 71)
- Ev71 vlp in complex with intact antibody d5 (8 MDa, Sample)