Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6eri
Q-score: 0.514
Boerema AP, Aibara S, Paul B, Tobiasson V, Kimanius D, Forsberg BO, Wallden K, Lindahl E, Amunts A
Nat Plants (2018) 4 pp. 212-217 [ Pubmed: 29610536 DOI: doi:10.1038/s41477-018-0129-6 ]
- 30s ribosomal protein s20, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l15, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (38 kDa, RNA from Spinacia oleracea)
- Bs1c (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l18, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l9, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l29, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l27, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l24, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s10 alpha, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- Ribosome-recycling factor, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (18 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s9, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l28, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l17, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l5, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- Ribosome-binding factor psrp1, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s11, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l6, chloroplastic (19 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s17, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (8 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s6 alpha, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (5 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s13, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s21, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (480 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (9 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 5 alpha, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (19 kDa, Protein from Spinacia oleracea)
- Chloroplast ribosome in complex with rrf (Complex from Spinacia oleracea)
- 50s ribosomal protein l4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (8 kDa, Protein from Spinacia oleracea)
Cryo-EM reconstruction of the small subunit of the chloroplast ribosome
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5mmj
Q-score: 0.396
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ Pubmed: 28007896 DOI: doi:10.15252/embj.201695959 ]
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- 16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)
Cryo-EM reconstruction of the 70S chloroplast ribosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5mmm
Q-score: 0.406
Bieri P, Leibundgut M, Saurer M, Boehringer D, Ban N
EMBO J (2017) 36 pp. 475-486 [ Pubmed: 28007896 DOI: doi:10.15252/embj.201695959 ]
- Chloroplast 70s ribosome (2 MDa, Complex from Spinacia oleracea)
- 23s ribosomal rna (911 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l22, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us13c (19 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 3, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl9c (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l32, chloroplastic (6 kDa, Protein from Spinacia oleracea)
- 4.5s ribosomal rna (34 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein bl27c (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us10c (21 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul14c (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul18c (18 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s2, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s14, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l14, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul29c (19 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs6c (23 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us9c (22 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l2, chloroplastic (29 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein 6, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l36, chloroplastic (4 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein cl37, psrp5 (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s7, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s15, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Ribosome-binding factor psrp1, chloroplastic (33 kDa, Protein from Spinacia oleracea)
- Zinc ion (65 Da, Ligand)
- Plastid ribosomal protein bs1c (14 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs21c (20 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l13, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l16, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s16, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- Plastid ribosomal protein ul15c (29 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l35, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul24c (21 kDa, Protein from Spinacia oleracea)
- 16s ribosomal rna (483 kDa, RNA from Spinacia oleracea)
- Plastid ribosomal protein ul3c (33 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l34, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l23, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s12, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l33, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Trna-phe (24 kDa, RNA from Spinacia oleracea)
- 30s ribosomal protein s8, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul10c (26 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s18, chloroplastic (12 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s19 alpha, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein us17c (18 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l20, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l31 (14 kDa, Protein from Spinacia oleracea)
- 5s ribosomal rna (39 kDa, RNA from Spinacia oleracea)
- 50s ribosomal protein l19, chloroplastic (26 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bs20c (20 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l11, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s31, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s4, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s11, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- 50s ribosomal protein l21, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein bl28c (16 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul5c (28 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul6c (24 kDa, Protein from Spinacia oleracea)
- Plastid ribosomal protein ul4c (32 kDa, Protein from Spinacia oleracea)
- 30s ribosomal protein s5, chloroplastic (33 kDa, Protein from Spinacia oleracea)