Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8wt6
Q-score: 0.604
Hiraizumi M, Perry NT, Durrant MG, Soma T, Nagahata N, Okazaki S, Athukoralage JS, Isayama Y, Pai JJ, Pawluk A, Konermann S, Yamashita K, Hsu PD, Nishimasu H
Nature (2024) 630 pp. 994-1002 [ Pubmed: 38926616 DOI: doi:10.1038/s41586-024-07570-2 ]
- Donor dna (13 kDa, DNA from Escherichia coli)
- Target dna (11 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- The is621 recombinase in complex with bridge rna, donor dna, and target dna in the pre-strand exchange state (Complex from Escherichia coli)
- Donor dna (13 kDa, DNA from Escherichia coli)
- Is621 transposase (36 kDa, Protein from Escherichia coli)
- Bridge rna (57 kDa, RNA from Escherichia coli)
- Target dna (11 kDa, DNA from Escherichia coli)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wt7
Q-score: 0.563
Hiraizumi M, Perry NT, Durrant MG, Soma T, Nagahata N, Okazaki S, Athukoralage JS, Isayama Y, Pai JJ, Pawluk A, Konermann S, Yamashita K, Hsu PD, Nishimasu H
Nature (2024) 630 pp. 994-1002 [ Pubmed: 38926616 DOI: doi:10.1038/s41586-024-07570-2 ]
- Donor dna (13 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Target dna (11 kDa, DNA from Escherichia coli)
- Bridge rna (57 kDa, RNA from Escherichia coli)
- The is621 recombinase in complex with bridge rna, donor dna, and target dna in the pre-strand exchange locked state (Complex from Escherichia coli)
- Donor dna (13 kDa, DNA from Escherichia coli)
- Is621 transposase (36 kDa, Protein from Escherichia coli)
- Target dna (11 kDa, DNA from Escherichia coli)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wt8
Q-score: 0.543
Hiraizumi M, Perry NT, Durrant MG, Soma T, Nagahata N, Okazaki S, Athukoralage JS, Isayama Y, Pai JJ, Pawluk A, Konermann S, Yamashita K, Hsu PD, Nishimasu H
Nature (2024) 630 pp. 994-1002 [ Pubmed: 38926616 DOI: doi:10.1038/s41586-024-07570-2 ]
- Donor dna-target dna (10 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Bridge rna (57 kDa, RNA from Escherichia coli)
- Donor dna (13 kDa, DNA from Escherichia coli)
- Is621 transposase (36 kDa, Protein from Escherichia coli)
- The is621 recombinase in complex with bridge rna, donor dna, and target dna in the post-strand exchange state (holliday junction intermediate) (Complex from Escherichia coli)
- Target dna-donor dna (15 kDa, DNA from Escherichia coli)
- Target dna (11 kDa, DNA from Escherichia coli)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wt9
Q-score: 0.57
Hiraizumi M, Perry NT, Durrant MG, Soma T, Nagahata N, Okazaki S, Athukoralage JS, Isayama Y, Pai JJ, Pawluk A, Konermann S, Yamashita K, Hsu PD, Nishimasu H
Nature (2024) 630 pp. 994-1002 [ Pubmed: 38926616 DOI: doi:10.1038/s41586-024-07570-2 ]
- The is621 recombinase in complex with bridge rna, donor dna, and target dna in the post-strand exchange state (holliday junction resolution) (Complex from Escherichia coli)
- Donor dna-target dna (10 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Bridge rna (57 kDa, RNA from Escherichia coli)
- Donor dna (13 kDa, DNA from Escherichia coli)
- Is621 transposase (36 kDa, Protein from Escherichia coli)
- Target dna-donor dna (15 kDa, DNA from Escherichia coli)
- Target dna (11 kDa, DNA from Escherichia coli)