48-nm repeat of the native axonemal doublet microtubule from bovine sperm
Leung MR, Zeng J, Wang X, Roelofs MC, Huang W, Zenezini Chiozzi R, Hevler JF, Heck AJR, Dutcher SK, Brown A, Zhang R, Zeev-Ben-Mordehai T
Cell (2023) 186 pp. 2880-2896.e17 [ Pubmed: 37327785 DOI: doi:10.1016/j.cell.2023.05.026 ]
- Chromosome 19 c17orf98 homolog (17 kDa, Protein from Bos taurus)
- Coiled-coil domain-containing protein 105 (57 kDa, Protein from Bos taurus)
- Cilia- and flagella- associated protein 210 (65 kDa, Protein from Bos taurus)
- Uncharacterized protein c1orf100 homolog (16 kDa, Protein from Bos taurus)
- Sperm-associated antigen 8 (51 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3 (27 kDa, Protein from Bos taurus)
- Stabilizer of axonemal microtubules 3 (37 kDa, Protein from Bos taurus)
- Spermatogenesis-associated protein 48 (49 kDa, Protein from Bos taurus)
- Ef-hand domain-containing family member b (97 kDa, Protein from Bos taurus)
- Tektin-1 (48 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 161 (36 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Protein flattop (21 kDa, Protein from Bos taurus)
- Tepp protein (24 kDa, Protein from Bos taurus)
- Uncharacterized protein mgc137036 (21 kDa, Protein from Bos taurus)
- Ef-hand calcium-binding domain-containing protein 3 (50 kDa, Protein from Bos taurus)
- Uncharacterized protein c10orf82 homolog (26 kDa, Protein from Bos taurus)
- Tubulin beta-4b chain (49 kDa, Protein from Bos taurus)
- Testis-expressed sequence 37 protein (20 kDa, Protein from Bos taurus)
- Ef-hand domain-containing protein (31 kDa, Protein from Bos taurus)
- Upf0602 protein c4orf47 homolog (34 kDa, Protein from Bos taurus)
- Piercer of microtubule wall 2 protein (13 kDa, Protein from Bos taurus)
- Tektin-3 (56 kDa, Protein from Bos taurus)
- Enkurin (30 kDa, Protein from Bos taurus)
- Testis expressed 49 (15 kDa, Protein from Bos taurus)
- Chromosome 7 open reading frame 31 (67 kDa, Protein from Bos taurus)
- 48-nm repeat of the native axonemal doublet microtubule from bovine sperm (Complex from Bos taurus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha-3 chain (49 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from Bos taurus)
- Protein phosphatase 1 regulatory subunit 32 (47 kDa, Protein from Bos taurus)
- Tektin-5 (56 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 68 (20 kDa, Protein from Bos taurus)
- Chromosome 13 c20orf85 homolog (15 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3 like 1 (30 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 144 (16 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from Bos taurus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Bos taurus)
- Piercer of microtubule wall 1 protein (15 kDa, Protein from Bos taurus)
- Rib43a-like with coiled-coils protein 2 (44 kDa, Protein from Bos taurus)
- Ef-hand domain-containing protein 1 (74 kDa, Protein from Bos taurus)
- Atp6v1f neighbor (20 kDa, Protein from Bos taurus)
- Spermatid-specific manchette-related protein 1 (35 kDa, Protein from Bos taurus)
- Sperm acrosome associated 9 (25 kDa, Protein from Bos taurus)
- Dual specificity phosphatase 21 (22 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3b (32 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Tektin-2 (49 kDa, Protein from Bos taurus)
- Tektin-4 (52 kDa, Protein from Bos taurus)
- Protein fam166c (23 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 276 (19 kDa, Protein from Bos taurus)
- Family with sequence similarity 166 member a (36 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Bos taurus)
- Parkin coregulated gene protein (29 kDa, Protein from Bos taurus)
- Chromosome 20 c5orf49 homolog (16 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Bos taurus)
- Cfap97 domain containing 1 (19 kDa, Protein from Bos taurus)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from Bos taurus)
- Testis-expressed protein 43 (15 kDa, Protein from Bos taurus)
- Theg spermatid protein like (50 kDa, Protein from Bos taurus)
- Testis expressed 33 (30 kDa, Protein from Bos taurus)
- Tektin bundle interacting protein 1 (24 kDa, Protein from Bos taurus)
- Testis specific serine kinase 6 (30 kDa, Protein from Bos taurus)
- Uncharacterized protein c4orf45 homolog (22 kDa, Protein from Bos taurus)
- Stabilizer of axonemal microtubules 1 (40 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 77 (32 kDa, Protein from Bos taurus)
- Ef-hand domain-containing family member c2 (85 kDa, Protein from Bos taurus)
In situ structure of axonemal doublet microtubules in mouse sperm with 48-nm repeat
Tai L, Yin G, Huang X, Sun F, Zhu Y
Cell Discov (2023) 9 pp. 116-116 [ Pubmed: 37989994 DOI: doi:10.1038/s41421-023-00606-3 ]
- Piercer of microtubule wall 2 protein (13 kDa, Protein from Mus musculus)
- Tektin-4 (52 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Mus musculus)
- Tektin-2 (50 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Mus musculus)
- Parkin coregulated gene protein homolog (27 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from Mus musculus)
- Nucleoside diphosphate kinase 7 (44 kDa, Protein from Mus musculus)
- Tubulin beta-4b chain (47 kDa, Protein from Mus musculus)
- Dual specificity phosphatase 21 (21 kDa, Protein from Mus musculus)
- Tektin-3 (56 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member b (95 kDa, Protein from Mus musculus)
- Tektin bundle-interacting protein 1 (23 kDa, Protein from Mus musculus)
- Protein fam166a (36 kDa, Protein from Mus musculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mouse sperm (Cell from Mus musculus)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from Mus musculus)
- Tektin-1 (48 kDa, Protein from Mus musculus)
- Enkurin (29 kDa, Protein from Mus musculus)
- Detyrosinated tubulin alpha-3 chain (48 kDa, Protein from Mus musculus)
- Ef-hand domain-containing protein 1 (75 kDa, Protein from Mus musculus)
- Testis-expressed protein 43 (16 kDa, Protein from Mus musculus)
- Sperm acrosome-associated protein 9 (19 kDa, Protein from Mus musculus)
- Protein flattop (20 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 210 (65 kDa, Protein from Mus musculus)
- Cilia and flagella-associated protein 77 (32 kDa, Protein from Mus musculus)
- Ef-hand calcium-binding domain-containing protein 6 (176 kDa, Protein from Mus musculus)
- Coiled-coil domain-containing protein 105 (57 kDa, Protein from Mus musculus)
- Sperm-associated antigen 8 (50 kDa, Protein from Mus musculus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from Mus musculus)
- Tektin-5 (62 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 276 (18 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from Mus musculus)
- Piercer of microtubule wall 1 protein (18 kDa, Protein from Mus musculus)
- Protein fam166c (23 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from Mus musculus)
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8iyj
Q-score: 0.35
Zhou L, Liu H, Liu S, Yang X, Dong Y, Pan Y, Xiao Z, Zheng B, Sun Y, Huang P, Zhang X, Hu J, Sun R, Feng S, Zhu Y, Liu M, Gui M, Wu J
Cell (2023) 186 pp. 2897-2910.e19 [ DOI: doi:10.1016/j.cell.2023.05.009 Pubmed: 37295417 ]
- Piercer of microtubule wall 2 protein (13 kDa, Protein from Mus musculus)
- Tektin-4 (52 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Mus musculus)
- Tubulin alpha-3 chain (50 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from Mus musculus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Mus musculus)
- Testis-specific serine/threonine-protein kinase 6 (30 kDa, Protein from Mus musculus)
- Tektin-2 (50 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 68 (19 kDa, Protein from Mus musculus)
- Parkin coregulated gene protein homolog (27 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from Mus musculus)
- Nucleoside diphosphate kinase 7 (44 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Mus musculus)
- Dual specificity phosphatase 21 (21 kDa, Protein from Mus musculus)
- Outer dense fiber protein 3 (27 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member b (95 kDa, Protein from Mus musculus)
- Tektin-3 (56 kDa, Protein from Mus musculus)
- Tektin bundle-interacting protein 1 (23 kDa, Protein from Mus musculus)
- Protein fam166a (36 kDa, Protein from Mus musculus)
- Uncharacterized protein c10orf82 homolog (25 kDa, Protein from Mus musculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from Mus musculus)
- Tektin-1 (48 kDa, Protein from Mus musculus)
- Enkurin (29 kDa, Protein from Mus musculus)
- Testis-expressed sequence 37 protein (21 kDa, Protein from Mus musculus)
- Ef-hand domain-containing protein 1 (75 kDa, Protein from Mus musculus)
- Tubulin beta-4b chain (49 kDa, Protein from Mus musculus)
- Testis-expressed protein 43 (16 kDa, Protein from Mus musculus)
- Mouse sperm dmt (Complex from Mus musculus)
- Rib43a-like with coiled-coils protein 1 (45 kDa, Protein from Mus musculus)
- Protein flattop (20 kDa, Protein from Mus musculus)
- Protein phosphatase 1 regulatory subunit 32 (47 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 210 (65 kDa, Protein from Mus musculus)
- Cilia and flagella-associated protein 77 (32 kDa, Protein from Mus musculus)
- Ef-hand calcium-binding domain-containing protein 6 (176 kDa, Protein from Mus musculus)
- Magnesium ion (24 Da, Ligand)
- Coiled-coil domain-containing protein 105 (57 kDa, Protein from Mus musculus)
- Sperm-associated antigen 8 (50 kDa, Protein from Mus musculus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Mus musculus)
- Ef-hand domain-containing family member c2 (87 kDa, Protein from Mus musculus)
- Family with sequence similarity 183, member b (16 kDa, Protein from Mus musculus)
- Tektin-5 (62 kDa, Protein from Mus musculus)
- Spermatid-specific manchette-related protein 1 (29 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 276 (18 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 90 (20 kDa, Protein from Mus musculus)
- Testis, prostate and placenta-expressed protein (24 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from Mus musculus)
- Piercer of microtubule wall 1 protein (18 kDa, Protein from Mus musculus)
- Protein fam166c (23 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Mus musculus)
- Testis expressed 49 (15 kDa, Protein from Mus musculus)
- Cilia- and flagella-associated protein 161 (34 kDa, Protein from Mus musculus)
cryo-EM structure of sea urchin sperm doublet microtubule (48-nm periodicity)
Leung MR, Zeng J, Wang X, Roelofs MC, Huang W, Zenezini Chiozzi R, Hevler JF, Heck AJR, Dutcher SK, Brown A, Zhang R, Zeev-Ben-Mordehai T
Cell (2023) 186 pp. 2880- [ Pubmed: 37327785 DOI: doi:10.1016/j.cell.2023.05.026 ]
- Trichohyalin-plectin-homology domain-containing protein (65 kDa, Protein from Strongylocentrotus purpuratus)
- Trichohyalin-plectin-homology domain-containing protein (62 kDa, Protein from Strongylocentrotus purpuratus)
- Testicular haploid expressed gene protein-like (30 kDa, Protein from Strongylocentrotus purpuratus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cilia- and flagella-associated protein 126 (15 kDa, Protein from Strongylocentrotus purpuratus)
- Protein fam166b (48 kDa, Protein from Strongylocentrotus purpuratus)
- Tex43 (14 kDa, Protein from Strongylocentrotus purpuratus)
- Nucleoside diphosphate kinase (42 kDa, Protein from Strongylocentrotus purpuratus)
- Spata48 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (53 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 52 (70 kDa, Protein from Strongylocentrotus purpuratus)
- Tubulin alpha chain (50 kDa, Protein from Strongylocentrotus purpuratus)
- Tex49 (17 kDa, Protein from Strongylocentrotus purpuratus)
- Flagellar flij protein (14 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 97 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap276 (19 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (46 kDa, Protein from Strongylocentrotus purpuratus)
- Pierce1 (13 kDa, Protein from Strongylocentrotus purpuratus)
- Tepp protein (21 kDa, Protein from Strongylocentrotus purpuratus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spata45 (9 kDa, Protein from Strongylocentrotus purpuratus)
- Rib35 (34 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 45 (64 kDa, Protein from Strongylocentrotus purpuratus)
- Coiled-coil domain-containing protein 81 (79 kDa, Protein from Strongylocentrotus purpuratus)
- Saxo3(loc115918676) (37 kDa, Protein from Strongylocentrotus purpuratus)
- C4orf45 (32 kDa, Protein from Strongylocentrotus purpuratus)
- Tex26(loc100888047) (19 kDa, Protein from Strongylocentrotus purpuratus)
- Ef-hand domain-containing protein (66 kDa, Protein from Strongylocentrotus purpuratus)
- Sea urchin sperm doublet microtubule (Cellular component from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 77 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Tex36(cfap95, c9orf135) (25 kDa, Protein from Strongylocentrotus purpuratus)
- Outer dense fiber protein 3 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Ef-hand domain-containing family member c2 (85 kDa, Protein from Strongylocentrotus purpuratus)
- Sperm-associated antigen 8 (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tubulin beta chain (50 kDa, Protein from Strongylocentrotus purpuratus)
- Magnesium ion (24 Da, Ligand)
- Cfap96(c4orf47) (33 kDa, Protein from Strongylocentrotus purpuratus)
- Outer dense fiber protein 3 (30 kDa, Protein from Strongylocentrotus purpuratus)
- Cilia- and flagella-associated protein 161 (32 kDa, Protein from Strongylocentrotus purpuratus)
- Flagellar protofilament ribbon protein rib74 (74 kDa, Protein from Strongylocentrotus purpuratus)
- Tex49_homologue(loc580808) (20 kDa, Protein from Strongylocentrotus purpuratus)
- Meiosis-specific nuclear structural protein 1 (61 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap107 (27 kDa, Protein from Strongylocentrotus purpuratus)
- Rib43a-like with coiled-coils protein 2 (45 kDa, Protein from Strongylocentrotus purpuratus)
- Cfa20 domain-containing protein (22 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap144(fam183a) (16 kDa, Protein from Strongylocentrotus purpuratus)
- Fam166c (23 kDa, Protein from Strongylocentrotus purpuratus)
- Tektin (49 kDa, Protein from Strongylocentrotus purpuratus)
- Atp6v1fnb (21 kDa, Protein from Strongylocentrotus purpuratus)
- Protein phosphatase 1 regulatory subunit 32 (52 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap90(c5orf49) (19 kDa, Protein from Strongylocentrotus purpuratus)
- Cfap68(upf0686, c11orf1) (17 kDa, Protein from Strongylocentrotus purpuratus)
- Tex33 (40 kDa, Protein from Strongylocentrotus purpuratus)
- Pacrg (26 kDa, Protein from Strongylocentrotus purpuratus)
- Helo_like_n(loc577943) (34 kDa, Protein from Strongylocentrotus purpuratus)
- Meiosis-specific nuclear structural protein 1 (17 kDa, Protein from Strongylocentrotus purpuratus)
- Enkurin domain-containing protein (30 kDa, Protein from Strongylocentrotus purpuratus)
- Coiled-coil domain-containing protein 105 (49 kDa, Protein from Strongylocentrotus purpuratus)
- C20orf85 (23 kDa, Protein from Strongylocentrotus purpuratus)
Structure of HSV2 viron capsid portal vertex
Resolution: 5.39 Å
EM Method: Single-particle
Fitted PDBs: 6m6g
Q-score: 0.188
Wang N, Chen W, Zhu L, Zhu D, Feng R, Wang J, Zhu B, Zhang X, Chen X, Liu X, Yan R, Ni D, Zhou GG, Liu H, Rao Z, Wang X
Protein Cell (2020) 11 pp. 366-373 [ Pubmed: 32285350 DOI: doi:10.1007/s13238-020-00711-z ]
- Human herpesvirus 2 (Virus from Human herpesvirus 2)
- Major capsid protein (149 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 1 (50 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 2)
- Large tegument protein deneddylase (330 kDa, Protein from Human herpesvirus 2)
- Capsid vertex component 2 (63 kDa, Protein from Human herpesvirus 2)
- Coiled coils (7 kDa, Protein from Human herpesvirus 2)
- Coiled coils (7 kDa, Protein from Human herpesvirus 2)
- Capsid vertex component 1 (74 kDa, Protein from Human herpesvirus 2)
- Small capsomere-interacting protein (12 kDa, Protein from Human herpesvirus 2)
Structure of HSV2 B-capsid portal vertex
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 6m6i
Q-score: 0.257
Wang N, Chen W, Zhu L, Zhu D, Feng R, Wang J, Zhu B, Zhang X, Chen X, Liu X, Yan R, Ni D, Zhou GG, Liu H, Rao Z, Wang X
Protein Cell (2020) 11 pp. 366-373 [ Pubmed: 32285350 DOI: doi:10.1007/s13238-020-00711-z ]
- Major capsid protein (149 kDa, Protein from Human herpesvirus 2)
- Small capsomere-interacting protein (12 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 1 (50 kDa, Protein from Human herpesvirus 2)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 2)
- Coiled coils chain 2 (7 kDa, Protein from Human herpesvirus 2)
- Coiled coils chain 1 (6 kDa, Protein from Human herpesvirus 2)
- Human alphaherpesvirus 2 (Virus from Human alphaherpesvirus 2)