Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8g5j
Q-score: 0.513
Buchel G, Nayak AR, Herbine K, Sarfallah A, Sokolova VO, Zamudio-Ochoa A, Temiakov D
Nat Commun (2023) 14 pp. 8501-8501 [ Pubmed: 38151585 DOI: doi:10.1038/s41467-023-44198-8 ]
- Template dna (7 kDa, DNA from synthetic construct)
- Cryo-em structure of the mismatch uncoupling complex (ii) of human mitochondrial dna polymerase gamma (362 kDa, Complex from Homo sapiens)
- Dna polymerase subunit gamma-1 (139 kDa, Protein from Homo sapiens)
- Mismatched primer dna (6 kDa, DNA from synthetic construct)
- Dna polymerase subunit gamma-2, mitochondrial (54 kDa, Protein from Homo sapiens)
Human DNA polymerase-alpha/primase elongation complex II bound to primer/template
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 8d9d
Q-score: 0.347
He Q, Baranovskiy AG, Morstadt LM, Lisova AE, Babayeva ND, Lusk BL, Lim CJ, Tahirov TH
Nat Struct Mol Biol (2023) 30 pp. 579-583 [ DOI: doi:10.1038/s41594-023-00971-3 Pubmed: 37069376 ]
- Zinc ion (65 Da, Ligand)
- Dna primase small subunit (49 kDa, Protein from Homo sapiens)
- 2'-deoxyadenosine 5'-triphosphate (491 Da, Ligand)
- Elongation complex ii of human dna polymerase alpha/primase bound to rna-dna primer and dna template (340 kDa, Complex from Homo sapiens)
- Dna primase large subunit (58 kDa, Protein from Homo sapiens)
- Dna/rna (5'-d(*(gtp))-r(p*gp*cp*gp*gp*cp*ap*cp*g)-d(p*ap*cp*c)-3') (3 kDa, Macromolecule from Homo sapiens)
- Dna polymerase alpha subunit b (49 kDa, Protein from Homo sapiens)
- Dna (5'-d(*ap*tp*gp*gp*tp*cp*gp*tp*gp*cp*cp*gp*cp*cp*ap*ap*tp*ap*a)-3') (5 kDa, DNA from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna polymerase alpha catalytic subunit (166 kDa, Protein from Homo sapiens)
CryoEM structure of DNA-PK catalytic subunit complexed with DNA (Complex II)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7k1b
Q-score: 0.336
Chen X, Xu X, Chen Y, Cheung JC, Wang H, Jiang J, de Val N, Fox T, Gellert M, Yang W
Mol Cell (2021) 81 pp. 801-810.e3 [ Pubmed: 33385326 DOI: doi:10.1016/j.molcel.2020.12.015 ]
- Complex ii (Complex from Homo sapiens)
- Dna (5'-d(p*gp*cp*ap*tp*gp*cp*tp*cp*tp*ap*cp*tp*gp*cp*tp*tp*cp*gp*ap*tp*ap*tp*cp*g)-3') (7 kDa, DNA from synthetic construct)
- Dna (5'-d(p*ap*ap*gp*cp*ap*gp*tp*ap*gp*ap*gp*cp*ap*tp*gp*c)-3') (4 kDa, DNA from synthetic construct)
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6n7s
Q-score: 0.239
Gao Y, Cui Y, Fox T, Lin S, Wang H, de Val N, Zhou ZH, Yang W
Science (2019) 363 [ Pubmed: 30679383 DOI: doi:10.1126/science.aav7003 ]
- Dna (25-mer) (7 kDa, DNA from Enterobacteria phage T7)
- Bacteriophage t7 gene product 4 (gp4) helicase primase dna complex ii (Complex from Enterobacteria phage T7)
- Thymidine-5'-triphosphate (482 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna primase/helicase (62 kDa, Protein from Enterobacteria phage T7)