Cryo-EM Structure of Bacteriophage FCWL1 head-to-tail interface
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9jlf
Q-score: 0.451
Cai C, Wang Y, Liu Y, Shao Q, Wang A, Li L, Zheng Y, Zhang T, Luo Z, Yang C, Fang Q
To Be Published
- Connector protein (13 kDa, Protein from Escherichia phage FCWL1)
- Escherichia phage fcwl1 (Virus from Escherichia phage FCWL1)
- Terminator protein (15 kDa, Protein from Escherichia phage FCWL1)
- Portal protein (49 kDa, Protein from Escherichia phage FCWL1)
- Tail tube protein (24 kDa, Protein from Escherichia phage FCWL1)
- Adaptor protein (15 kDa, Protein from Escherichia phage FCWL1)
The Composite Cryo-EM Structure of the Portal Vertex of Bacteriophage FCWL1
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9kmh
Q-score: 0.475
Cai C, Wang Y, Liu Y, Shao Q, Wang A, Li L, Zheng Y, Zhang T, Luo Z, Yang C, Fang Q
To Be Published
- Connector protein (13 kDa, Protein from Escherichia phage FCWL1)
- Major capsid protein (35 kDa, Protein from Escherichia phage FCWL1)
- Escherichia phage fcwl1 (Virus from Escherichia phage FCWL1)
- Decoration protein (17 kDa, Protein from Escherichia phage FCWL1)
- Terminator protein (15 kDa, Protein from Escherichia phage FCWL1)
- Decoration protein gp29 (26 kDa, Protein from Escherichia phage FCWL1)
- Portal protein (49 kDa, Protein from Escherichia phage FCWL1)
- Tail tube protein (24 kDa, Protein from Escherichia phage FCWL1)
- Adaptor protein (15 kDa, Protein from Escherichia phage FCWL1)
Portal protein of empty Haloferax tailed virus 1.
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8qsi
Q-score: 0.532
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
Portal capsid interface of full Haloferax tailed virus 1.
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8qsy
Q-score: 0.571
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hypothetical protein gp21 (9 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Hk97 gp5-like major capsid protein (43 kDa, Protein from Haloferax tailed virus 1)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Capsid stabilization protein (13 kDa, Protein from Haloferax tailed virus 1)
Portal protein of full Haloferax tailed virus 1.
Resolution: 2.342 Å
EM Method: Single-particle
Fitted PDBs: 8qqn
Q-score: 0.561
Zhang D, Daum B, Isupov MN, McLaren M, Oksanen H, Quax TEF, Schwarzer S, Gold VAM, Antson A
To Be Published
- Hk97 gp6-like/spp1 gp15-like head-tail connector (15 kDa, Protein from Haloferax tailed virus 1)
- Portal protein (75 kDa, Protein from Haloferax tailed virus 1)
- Magnesium ion (24 Da, Ligand)
- Haloferax tailed virus 1 (Virus from Haloferax tailed virus 1)
Mature virion portal of bacteriophage lambda
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8xow
Q-score: 0.433
J Virol (2024) 98 pp. e0006824-e0006824 [ DOI: doi:10.1128/jvi.00068-24 Pubmed: 38661364 ]
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
Mature virion portal of phage lambda with DNA
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8xpm
Q-score: 0.31
J Virol (2024) 98 pp. e0006824-e0006824 [ DOI: doi:10.1128/jvi.00068-24 Pubmed: 38661364 ]
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
- Dna (92-mer) (28 kDa, DNA from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
- Dna (104-mer) (32 kDa, DNA from Escherichia phage Lambda)
Mature virion portal vertex of bacteriophage lambda
Resolution: 4.07 Å
EM Method: Single-particle
Fitted PDBs: 8xqb
Q-score: 0.334
J Virol (2024) 98 pp. e0006824-e0006824 [ DOI: doi:10.1128/jvi.00068-24 Pubmed: 38661364 ]
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
- Capsid decoration protein (11 kDa, Protein from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
Cryo-EM structure of the RAF activating complex KSR-MEK-CNK-HYP
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8bw9
Q-score: 0.468
Maisonneuve P, Sahmi M, Bergeron-Labrecque F, Ma XI, Queguiner J, Arseneault G, Lefrancois M, Kurinov I, Fronzes R, Sicheri F, Therrien M
Nat Struct Mol Biol (2024) 31 pp. 1028-1038 [ DOI: doi:10.1038/s41594-024-01233-6 Pubmed: 38388830 ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Connector enhancer of ksr protein cnk (38 kDa, Protein from Drosophila melanogaster)
- Dual specificity mitogen-activated protein kinase kinase dsor1 (43 kDa, Protein from Drosophila melanogaster)
- Protein aveugle (13 kDa, Protein from Drosophila melanogaster)
- Trametinib (615 Da, Ligand)
- Ksr (36 kDa, Protein from Drosophila melanogaster)
- Quaternary complex of the kinase domains of ksr and mek bound to the scaffolding complex cnk-hyp (132 kDa, Complex from Drosophila melanogaster)
SaPI1 portal structure in mature capsids containing DNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8vd8
Q-score: 0.545
Mukherjee A, Kizziah JL, Hawkins NC, Nasef MO, Parker LK, Dokland T
J Mol Biol (2023) 436 pp. 168415-168415 [ Pubmed: 38135177 DOI: doi:10.1016/j.jmb.2023.168415 ]
- Dubowvirus dv80alpha (Virus from Dubowvirus dv80alpha)
- Connector (12 kDa, Protein from Dubowvirus dv80alpha)
- Portal protein (59 kDa, Protein from Dubowvirus dv80alpha)