cryoEM structure of the truncated HIV-1 Vif/CBFbeta/A3F complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nil
Q-score: 0.383
Hu Y, Desimmie BA, Nguyen HC, Ziegler SJ, Cheng TC, Chen J, Wang J, Wang H, Zhang K, Pathak VK, Xiong Y
Nat Struct Mol Biol (2019) 26 pp. 1176-1183 [ Pubmed: 31792451 DOI: doi:10.1038/s41594-019-0343-6 ]
- Core-binding factor subunit beta (17 kDa, Protein from Homo sapiens)
- Dna dc->du-editing enzyme apobec-3f (24 kDa, Protein from Homo sapiens)
- Virion infectivity factor (16 kDa, Protein from Human immunodeficiency virus 1)
- Zinc ion (65 Da, Ligand)
- 6xhis tagged ha3fctd-40aa-hcbfbeta fusion (Complex from Homo sapiens)
- Truncated vif/cbfbeta/a3fctd complex (17 kDa, Complex from Human immunodeficiency virus 1)
- Alpha domain truncated hiv-1 vif (Complex from Human immunodeficiency virus 1)
CryoEM reconstruction of the full HIV-1 Vif/CBFbeta/A3F complex
Hu Y, Desimmie BA, Nguyen HC, Ziegler SJ, Cheng TC, Chen J, Wang J, Wang H, Zhang K, Pathak VK, Xiong Y
Nat Struct Mol Biol (2019) 26 pp. 1176-1183 [ Pubmed: 31792451 DOI: doi:10.1038/s41594-019-0343-6 ]
- Vif/cbfbeta/a3fctd complex (250 kDa, Complex from Homo sapiens)
- Human apobec3f c-terminal domain (ha3fctd) (Protein from Homo sapiens)
- Hiv-1 virion infectivity factor (vif) (Protein from Human immunodeficiency virus 1)
- Apobec3f c-terminal domain (ha3fctd) (Complex from Homo sapiens)
- Core-binding factor beta (cbfbeta) (Complex from Human immunodeficiency virus 1)
- Hiv-1 virion infectivity factor (vif) (Complex)
- Human core-binding factor beta (cbfbeta) (Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5zvs
Q-score: 0.511
Wang X, Zhang F, Su R, Li X, Chen W, Chen Q, Yang T, Wang J, Liu H, Fang Q, Cheng L
PNAS (2018) 115 pp. 7344-7349 [ Pubmed: 29941585 DOI: doi:10.1073/pnas.1803885115 ]
- Putative core protein ntpase/vp5 (80 kDa, Protein from Grass carp reovirus)
- Vp2 (141 kDa, Protein from Grass carp reovirus)
- Vp3 (132 kDa, Protein from Grass carp reovirus)
- Grass carp reovirus (Virus from Grass carp reovirus)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5zvt
Q-score: 0.195
Wang X, Zhang F, Su R, Li X, Chen W, Chen Q, Yang T, Wang J, Liu H, Fang Q, Cheng L
PNAS (2018) 115 pp. 7344-7349 [ Pubmed: 29941585 DOI: doi:10.1073/pnas.1803885115 ]
- N-terminus of outer capsid protein vp5 (4 kDa, Protein from Grass carp reovirus)
- Vp1 (141 kDa, Protein from Grass carp reovirus)
- C-terminus of outer capsid protein vp5 (64 kDa, Protein from Grass carp reovirus)
- Vp3 (132 kDa, Protein from Grass carp reovirus)
- Outer capsid vp7 (29 kDa, Protein from Grass carp reovirus)
- Core protein vp6 (44 kDa, Protein from Grass carp reovirus)
- Myristic acid (228 Da, Ligand)
- Grass carp reovirus (Virus from Grass carp reovirus)